View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_48 (Length: 375)
Name: NF14117_low_48
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 22492643 - 22492298
Alignment:
| Q |
15 |
cagagacaacaaaaacaccaatctcatcaaccattttcacacagaaatcatgaaacatagttgaaccagcacttgctactatgaatccacttccatgaaa |
114 |
Q |
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| T |
22492643 |
cagagacaacaaaaacaccaatctcatcaaccattttcacacagaaatcatgaaacatagttgaaccagcacttgctactatgaatccacttccatgaaa |
22492544 |
T |
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| Q |
115 |
gaaaacaatgagaggtagtttgtgatgatcattagaaattggtttgttgggtaggaataatctaacccatgttttgtttgtttggttgattgtgatgtct |
214 |
Q |
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| T |
22492543 |
gaaaacaatgagaggtagtttgtgatgatcattggaaattggtttgttgggtaggaataatctaacccatgttttgtttgtttggttgattgtgatgtct |
22492444 |
T |
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| Q |
215 |
ttggtgagaactgtgattggaagtgttggatcagatgaagggggagtgtatggaacttggtgtaggcgagtgattgtgttgttggaggttcgaatgatat |
314 |
Q |
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| T |
22492443 |
ttggtgagaactgtgattggaagtgttggatcagatgaaggggaagtgtatggaacttggtgtaggcgagtgattgtgttgttggaggttcgaatgatat |
22492344 |
T |
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| Q |
315 |
taagatgtttgtaaggatcaatggtttgagatggtggtgaagtttg |
360 |
Q |
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| T |
22492343 |
taagatgtttgtaaggatcaatggtttgagatggtggtgaagtttg |
22492298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 22399646 - 22399585
Alignment:
| Q |
164 |
ggtaggaataatctaacccatgttttgtttgtttggttgattgtgatgtctttggtgagaac |
225 |
Q |
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||||| ||||||| || |||||||| ||||| ||||||||| |||| |||||||||||||| |
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| T |
22399646 |
ggtagaaataatcgaagccatgtttggtttgattggttgatggtgagatctttggtgagaac |
22399585 |
T |
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