View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_low_5 (Length: 674)

Name: NF14117_low_5
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_low_5
NF14117_low_5
[»] chr3 (17 HSPs)
chr3 (74-207)||(17945312-17945445)
chr3 (217-448)||(17945476-17945719)
chr3 (290-448)||(19416768-19416923)
chr3 (228-402)||(19403711-19403901)
chr3 (446-634)||(19404007-19404190)
chr3 (74-155)||(19403510-19403590)
chr3 (322-402)||(19378769-19378848)
chr3 (446-569)||(19378959-19379084)
chr3 (308-402)||(18106200-18106295)
chr3 (446-559)||(18106404-18106517)
chr3 (446-530)||(17945745-17945829)
chr3 (399-448)||(19403933-19403982)
chr3 (520-571)||(19417010-19417061)
chr3 (398-448)||(19378879-19378929)
chr3 (399-448)||(18106329-18106378)
chr3 (74-106)||(19416713-19416745)
chr3 (446-506)||(19416949-19417009)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 17945312 - 17945445
Alignment:
Q  74 ttttgtttgatgcaagagtttaggattattggaattattgagaatgagataatgtcatcttcttgtgcagttttgtaatatcgtattaaaaatacaagac 173  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  17945312 ttttgtttgatgcaagagtttaggattatcggaattattgagaatgagataatgtcatcttcttgtgcagttttgtaatatctcattcaaaatacaagac 17945411  T
Q  174 ttcctactaattatcagtaggttgatcttcattg 207  Q
    ||||||||||||||||||||||||||||||||||    
T  17945412 ttcctactaattatcagtaggttgatcttcattg 17945445  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 217 - 448
Target Start/End: Original strand, 17945476 - 17945719
Alignment:
Q  217 gtaattttgatgaaacagtccgacattttttaccacgacaacgaagttatccctaagcagttcctctt--aattct--------------aaacacgtac 300  Q
    ||||||||||||||||||| | |||||||  ||||||||||||||||||||||||||| |||||||||  ||||||              |||||| |||    
T  17945476 gtaattttgatgaaacagttccacattttg-accacgacaacgaagttatccctaagcggttcctcttctaattcttcaagataatgcttaaacacctac 17945574  T
Q  301 aacagacacaaatttcaccgattgttcattacttgcaaaacttattcaattctaaatctaaatgaaggttcgttcgaatcagaagaacgcttacatcaat 400  Q
    ||||||||   ||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  17945575 aacagaca---atttcaccgattgttcattgcttgctaaacttattcaattcaaaatttaaatgaaggctcgttcgaatcagaagaacgcttacatcaat 17945671  T
Q  401 tactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 448  Q
    ||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  17945672 tactattttgtctcacagtgatcgcaaggcagattttgcttgctatgt 17945719  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 290 - 448
Target Start/End: Original strand, 19416768 - 19416923
Alignment:
Q  290 taaacacgtacaacagacacaaatttcaccgattgttcattacttgcaaaacttattcaattctaaatctaaatgaaggttcgttcgaatcagaagaacg 389  Q
    ||||||| |||||||||||   ||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  19416768 taaacacctacaacagaca---atttcaccgattgttcattgcttgctaaacttattcaattctaaatttaaatggaggctcgttcgaatcagaagaacg 19416864  T
Q  390 cttacatcaattactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 448  Q
    |||||||||||||||||||||||||||||||||| | ||||| |  |||||||||||||    
T  19416865 cttacatcaattactattttgtctcacagtgatcacaaggcagattttgcttgctatgt 19416923  T

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Target: chr3; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 228 - 402
Target Start/End: Original strand, 19403711 - 19403901
Alignment:
Q  228 gaaacagtccgacattttttaccacgacaacgaagttatccctaagcagttcctctt--aattct--------------aaacacgtacaacagacacaa 311  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||| ||||||||  ||||||              |||||| ||||||| ||||||    
T  19403711 gaaacagttccacattttttaccactacaacgaagttatccctaagcacttcctcttctaattcttcaaaataatgcttaaacacctacaacaaacacaa 19403810  T
Q  312 atttcaccgattgttcattacttgcaaaacttattcaattctaaatctaaatgaaggttcgttcgaatcagaagaacgcttacatcaatta 402  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  19403811 atttcactgattgttcattacttgcaaaacttattcaattcaaaatttaaatgaaggttcgttcgaatcagaagaacacttacatcaatta 19403901  T

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Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 446 - 634
Target Start/End: Original strand, 19404007 - 19404190
Alignment:
Q  446 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtattatatcatcatcacccatcctttaattgttgtgctaaagt 545  Q
    ||||||||||||||| ||| |||| | ||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||  ||||||||| |    
T  19404007 tgtcgtaaacaacctgatcttgcggcctagtgaataatataatgaacaacgatgctatattatatcatcatcacccatcctttaattactgtgctaaatt 19404106  T
Q  546 aaacttatcttttccgttagtcaatacnnnnnnnnntaaaataggtgttggagaaaggta-tggtgtggaacaaaaataaagatataaag 634  Q
    ||| ||||||||||| |||||||| ||          |||| |||||||||||| ||||| | |||||||||||||||||||||||||||    
T  19404107 aaatttatcttttcctttagtcaaaacaaaa------aaaaaaggtgttggagacaggtacttgtgtggaacaaaaataaagatataaag 19404190  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 19403510 - 19403590
Alignment:
Q  74 ttttgtttgatgcaagagtttaggattattggaattattgagaatgagataatgtcatcttcttgtgcagttttgtaatatc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  19403510 ttttgtttgatgcaagagtttaggattattggaattattgagagtgagataatgtcatcttcttgtgcag-tttgtaatatc 19403590  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 19378769 - 19378848
Alignment:
Q  322 ttgttcattacttgcaaaacttattcaattctaaatctaaatgaaggttcgttcgaatcagaagaacgcttacatcaatta 402  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  19378769 ttgttcattacttgcaaaacttattcaattctaaatttaaatgaaggttcgttcgaatcagaag-acacttacatcaatta 19378848  T

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Target: chr3; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 446 - 569
Target Start/End: Original strand, 19378959 - 19379084
Alignment:
Q  446 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgat--gctgtattatatcatcatcacccatcctttaattgttgtgctaaa 543  Q
    ||||||||||||||| ||| |||||| ||||||||||||||  ||||| ||||  ||| ||||||||||||||||||||||||||||||  |||||||||    
T  19378959 tgtcgtaaacaacctgatcttgcgacctagtgaataatattgtgaacaacgatatgctatattatatcatcatcacccatcctttaattactgtgctaaa 19379058  T
Q  544 gtaaacttatcttttccgttagtcaa 569  Q
    ||||| ||| |||| || ||||||||    
T  19379059 gtaaagttaactttccctttagtcaa 19379084  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 308 - 402
Target Start/End: Original strand, 18106200 - 18106295
Alignment:
Q  308 acaaatttcaccgattgttcattacttgcaaaa-cttattcaattctaaatctaaatgaaggttcgttcgaatcagaagaacgcttacatcaatta 402  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||| | ||| |||||||||| |||||| |||||||| ||| |||||||||||||    
T  18106200 acaaatttcattgattgttcattacttgcaaaaacttattcaatttttaatttaaatgaaggctcgttcaaatcagaacaactcttacatcaatta 18106295  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 446 - 559
Target Start/End: Original strand, 18106404 - 18106517
Alignment:
Q  446 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtattatatcatcatcacccatcctttaattgttgtgctaaagt 545  Q
    ||||||||||||||  | | ||| |||||||||||||||||  ||||| | ||||| |||||||||||||||||| ||| ||||||| |||||| | |||    
T  18106404 tgtcgtaaacaacccgagcttgcaacatagtgaataatattgtgaacaacaatgctatattatatcatcatcaccaatcttttaattattgtgcaatagt 18106503  T
Q  546 aaacttatcttttc 559  Q
    ||| | ||||||||    
T  18106504 aaagtaatcttttc 18106517  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 446 - 530
Target Start/End: Original strand, 17945745 - 17945829
Alignment:
Q  446 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtattatatcatcatcacccatcctttaa 530  Q
    ||||||||||||||  ||| ||| | |||||||||||||||  |||||||||| || ||||||||||||||||| ||||||||||    
T  17945745 tgtcgtaaacaaccagatcttgcaatatagtgaataatattgtgaacagcgattctatattatatcatcatcactcatcctttaa 17945829  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 19403933 - 19403982
Alignment:
Q  399 attactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 448  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  19403933 attactattttgtctcacagtgatcacaaggcaaacattgcttgctatgt 19403982  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 19417010 - 19417061
Alignment:
Q  520 ccatcctttaattgttgtgctaaagtaaacttatcttttccgttagtcaata 571  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  19417010 ccatcgtttaattgttgagctaaagtaaatttatcttttccgttagtcaata 19417061  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 448
Target Start/End: Original strand, 19378879 - 19378929
Alignment:
Q  398 aattactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 448  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  19378879 aattactattttgtcgcacagtgatcacaaggcaaacattgcttgctatgt 19378929  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 18106329 - 18106378
Alignment:
Q  399 attactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 448  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  18106329 attactattgtgtctcacagtgatcacaaggcaaacattgcttgctatgt 18106378  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 19416713 - 19416745
Alignment:
Q  74 ttttgtttgatgcaagagtttaggattattgga 106  Q
    |||||||||||||||||||||||||||||||||    
T  19416713 ttttgtttgatgcaagagtttaggattattgga 19416745  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 506
Target Start/End: Original strand, 19416949 - 19417009
Alignment:
Q  446 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtatt 506  Q
    ||||||||| |||| |||| ||||| |||||||||||||||  ||||||| ||||| ||||    
T  19416949 tgtcgtaaataacccaatcttgcgatatagtgaataatattgtgaacagccatgctatatt 19417009  T

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