View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_51 (Length: 367)
Name: NF14117_low_51
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2182638 - 2182517
Alignment:
| Q |
1 |
cctgagaacagttccaacctaagggcagatatctgctgagttcagacaatcgttgaaaagaaatgtaaatcttctgtaatgtaaatgatagatatttgat |
100 |
Q |
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| T |
2182638 |
cctgagaacagttccaacctaagggcagatatctgttgagttcagacaatcgttgaaaagaaatgtaaatcttctataatgtaaatgatagatatttgat |
2182539 |
T |
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| Q |
101 |
catctatatgttacgaagacaa |
122 |
Q |
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| T |
2182538 |
catctatatgttacgaagacaa |
2182517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 2182242 - 2182162
Alignment:
| Q |
253 |
ggcatatagttttccctagcatccctctacctctaactattgaaatatctttaacatatgctatccttcatactaatgctt |
333 |
Q |
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| T |
2182242 |
ggcatatggttttcccttgcatcgctcgacctctaactattgtaatatctttaacatattctatccttcgtactaatgctt |
2182162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 2182420 - 2182358
Alignment:
| Q |
173 |
acattagcccattcacaccggtaataatttgagagaatagaattattgaacgtaaccacgtgt |
235 |
Q |
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| T |
2182420 |
acattagcccgtcgacaccggtaataatttgagggaatagaattattgaatgtaaccacgtgt |
2182358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 50269858 - 50269908
Alignment:
| Q |
188 |
caccggtaataatttgagagaatagaattattgaacgtaaccacgtgtgtc |
238 |
Q |
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| T |
50269858 |
caccggtaataatttgagaaaattgaattattgaatgtacccacatgtgtc |
50269908 |
T |
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