View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_54 (Length: 351)
Name: NF14117_low_54
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 35353848 - 35354167
Alignment:
| Q |
16 |
caaatccaagcactatataaagagctttccatatgctaagatatcaatatcatcacaaactcataatatggcttccaaaccaggcatccttacagactgg |
115 |
Q |
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| T |
35353848 |
caaatccaaacactatataaagagctttccatatgctatgatatca---tcatcacaaactcataatatggcttccaaaccaggcatccttacagactgg |
35353944 |
T |
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| Q |
116 |
ccttggaaacctcttgggagcttcaaggttcttttacttactcaaatatgatactgcatttgtca---ttacaaaaatatttttatgacnnnnnnnctat |
212 |
Q |
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| T |
35353945 |
ccttggaaacctcttgggagcttcaaggttcttttacttactcaaatatgatactgcatttgtcatttttacaaaaatatttttatgaaaaaataactat |
35354044 |
T |
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| Q |
213 |
ttactttaattttttgatgaagtttttgtttgtcgcttatagttcatatatttagcatgaattttgaaacatatagtaatgttttgatattgactaacat |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354045 |
ttactttaattttttgataaagtttttgtttgtcgcttatagttcatatatttagcatgaattttgaaacatatagtaatgttttgatattgactaacat |
35354144 |
T |
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| Q |
313 |
attattctctgtctttgtctttg |
335 |
Q |
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| T |
35354145 |
attattctctgtctttgtctttg |
35354167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 35377839 - 35377957
Alignment:
| Q |
29 |
tatataaagagctttcc-atatgctaagatatcaatatcatcacaaactcataatatggcttccaaaccaggcatccttacagactggccttggaaacct |
127 |
Q |
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| T |
35377839 |
tatataaagagctttcccatatgctaagatatcatcat--tcgcaaattcataatatggcttccaaaccaggcatccttacaaactggccttgggaacct |
35377936 |
T |
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| Q |
128 |
cttgggagcttcaaggttctt |
148 |
Q |
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| T |
35377937 |
cttgggagcttcaaggttctt |
35377957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 35368982 - 35369068
Alignment:
| Q |
65 |
tcatcacaaactcataatatggcttccaaaccaggcatccttacagactggccttggaaacctcttgggagcttcaaggttctttta |
151 |
Q |
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| T |
35368982 |
tcatcccaaattcataatatggcttccaaaccaggaatccttacaaactggccttggaaacctcttgggagtttcaaggttctttta |
35369068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 19633643 - 19633552
Alignment:
| Q |
60 |
caatatcatcacaaactcataatatggcttccaaaccaggcatccttacagactggccttggaaacctcttgggagcttcaaggttctttta |
151 |
Q |
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|||| |||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19633643 |
caatctcatcacaaattcatattatggcttccaaaccgggcatccttacaaactggccttggaaacctcttgggagcttcaaggttctttta |
19633552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 19682523 - 19682609
Alignment:
| Q |
65 |
tcatcacaaactcataatatggcttccaaaccaggcatccttacagactggccttggaaacctcttgggagcttcaaggttctttta |
151 |
Q |
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|||||||||| || || |||||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||| ||||| |
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| T |
19682523 |
tcatcacaaattcctacaatggcttccaaagcgggcatccttacaaactggccttggaaacctcttgggagcttgaaggttgtttta |
19682609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 2259576 - 2259514
Alignment:
| Q |
83 |
atggcttccaaaccaggcatccttacagactggccttggaaacctcttgggagcttcaaggtt |
145 |
Q |
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||||| |||||||| ||||| ||||| || ||||| |||| |||||||||||| ||||||||| |
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| T |
2259576 |
atggcgtccaaacctggcatacttactgattggccatggacacctcttgggagattcaaggtt |
2259514 |
T |
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