View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_55 (Length: 340)
Name: NF14117_low_55
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 51431798 - 51431464
Alignment:
| Q |
1 |
ttaaatcttctatggcttttggttgatattttgtcttcagaatttccattagcacgcagacagtcacttcaaaggtttcttgagaagaggagaatcaggt |
100 |
Q |
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| T |
51431798 |
ttaaatcttctatggcttttggttgatattttgtcttcagaatttccattagcacgcagacagtcacttcaaaggtttcttgagaagaggagaatcaggt |
51431699 |
T |
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| Q |
101 |
agtagtactacctaccttacctagcagcaacatgtcatgtttagaatttccattgttgtaattgattgttatattctgaaatttttgattgattccattt |
200 |
Q |
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| T |
51431698 |
agtagtactacctacct-----agcagcaacatgtcatgtttagaatttccattgttgtaattgattgttatattctgaaatttttgattgattccattt |
51431604 |
T |
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| Q |
201 |
ttgtttctttaataaagggtacgtagcaaagcaccttatacctcttcatcatcaaaagcagcgaacaacagtgataacaacttcagtctagtaatggtgt |
300 |
Q |
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| T |
51431603 |
ttgtttctttaataaagggtacgtagcaaagcaccttatacctcttcatcatcaaaagcagctaacaacagtgataacaacttcagtctagtaatggtgt |
51431504 |
T |
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| Q |
301 |
cacttgagggcaaatagtactgttggttgaagtggtatgt |
340 |
Q |
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| T |
51431503 |
cacttgagggcaaataatactgttggttgaagtggtatgt |
51431464 |
T |
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Back To:
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 19532284 - 19532337
Alignment:
| Q |
34 |
tcttcagaatttccattagcacgcagacagtcacttcaaaggtttcttgagaag |
87 |
Q |
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| T |
19532284 |
tcttcagaatttccaatagcacgcagacattcacttcaaatgtttcttcagaag |
19532337 |
T |
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