View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_56 (Length: 337)
Name: NF14117_low_56
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 50389782 - 50389471
Alignment:
| Q |
19 |
gtatagaccgaacatgtaggtggctccggcagccgacatgattagaaaggaggcaaaaatgacaaaccaccgtccggtgatgacttggacggtgagactc |
118 |
Q |
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| T |
50389782 |
gtatagaccgaacatgtaggtggctccggcagccgacatgattagaaaggaggcaaaaatgacaaaccaccgtccggtgatgacttggacggtgagactc |
50389683 |
T |
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| Q |
119 |
ttcatgtctccccaatcatgaacaccaattgccatatttacttggattgcaagcaaatttgcaatagctagcacttttgttggcacttatagaagtagaa |
218 |
Q |
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| T |
50389682 |
ttcatgtctccccaatcatgaacaccaattgccatatttacttggattgcaagcaaatttgcaatagctagcacttttgttggcacttatagaagtagaa |
50389583 |
T |
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| Q |
219 |
gtgctattgtataaatgagatggagcaagttgtttaaaaccaatattggcgcccttattcgtttctaatgttgacttattgcatatgaagaaaacaatat |
318 |
Q |
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| T |
50389582 |
gtgctattgtataaatgagatggagcaagttgtttaaaaccaatattggtgcccttattcgtttctaatgttgacttattgcatatgaagaaaacaatat |
50389483 |
T |
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| Q |
319 |
ggccaacctatg |
330 |
Q |
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|||||||||||| |
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| T |
50389482 |
ggccaacctatg |
50389471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 50384637 - 50384509
Alignment:
| Q |
19 |
gtatagaccgaacatgtaggtggctccggcagccgacatgattagaaaggaggcaaaaatgacaaaccaccgtccggtgatgacttggacggtgagactc |
118 |
Q |
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| T |
50384637 |
gtatagaccgaacatgtaggtggctccggctgctgccatgattagaaaggaggcaaaaatgacgaaccaacgcccggtgatgaattggacggtgagactc |
50384538 |
T |
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| Q |
119 |
ttcatgtctccccaatcatgaacaccaat |
147 |
Q |
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| T |
50384537 |
ttcatgtctcccaaaccatgaacaccaat |
50384509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 50393056 - 50392928
Alignment:
| Q |
19 |
gtatagaccgaacatgtaggtggctccggcagccgacatgattagaaaggaggcaaaaatgacaaaccaccgtccggtgatgacttggacggtgagactc |
118 |
Q |
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||||||||| |||||||||||||||||||| || | |||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
50393056 |
gtatagaccaaacatgtaggtggctccggctgctgccatgataagaaaggaggcaaaaatgacgaaccaccgtccggtgatgaattggacagtgagactc |
50392957 |
T |
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| Q |
119 |
ttcatgtctccccaatcatgaacaccaat |
147 |
Q |
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| T |
50392956 |
ttcatgtctcctaaaccgtgaacaccaat |
50392928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 50406665 - 50406581
Alignment:
| Q |
23 |
agaccgaacatgtaggtggctccggcagccgacatgattagaaaggaggcaaaaatgacaaaccaccgtccggtgatgacttgga |
107 |
Q |
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||||| ||||||||||||||||| | ||| |||||||||||||| || ||||| | || ||||| ||||| ||||| ||||||| |
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| T |
50406665 |
agaccaaacatgtaggtggctcctgaagctgacatgattagaaaagaagcaaacaccacgaaccatcgtcctgtgataacttgga |
50406581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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