View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_58 (Length: 330)
Name: NF14117_low_58
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 21055873 - 21055570
Alignment:
| Q |
14 |
cacccaatattgtgggactcctactctcacaggtctcagatacataatcagaaattgcaacatcaattcagaatgagagtccaaagtattttctgaattt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055873 |
cacccaatattgtgggactcctactctcacaggtctcagatgcataatcagcaattgcaacatcaattcagaatgagagtccaaagtattttctgaattt |
21055774 |
T |
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| Q |
114 |
taaaaatttcagtgacacctttaactagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaa |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21055773 |
taaaaatttcagtgacacctttaaccagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttcaatgctttactgtgagtagtaaa |
21055674 |
T |
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| Q |
214 |
atgcctcattaaaatacttnnnnnnnngtctgtcttctaaagcatcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttcc |
313 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055673 |
atgcctcattaaaatacttaaaaaaaagtctgtcttctaaagcatcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttcc |
21055574 |
T |
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| Q |
314 |
ctcc |
317 |
Q |
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|||| |
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| T |
21055573 |
ctcc |
21055570 |
T |
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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 26363614 - 26363700
Alignment:
| Q |
146 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt |
232 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26363614 |
aatctctattcatgtgataattccaccttttttggtggatttttcaattctttattgtgagtagtaaaatgcctcattaaaatactt |
26363700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 26366169 - 26366255
Alignment:
| Q |
146 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt |
232 |
Q |
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|||||| ||||||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26366169 |
aatctccatgcatgtgataattccactctttttggtggatatttcaattctttattgtgagtagtaaaatgcctcattaaaatactt |
26366255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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