View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_60 (Length: 327)
Name: NF14117_low_60
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_60 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 67 - 327
Target Start/End: Complemental strand, 8014600 - 8014347
Alignment:
| Q |
67 |
atttcttccccattaaataatccacccttctttgtcaaagaataaaataaaataatccacccttcttgatttttggcattgaacacacacccttcgagtc |
166 |
Q |
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| T |
8014600 |
atttcttcccctttaaataatcccctcttctttgtcaaaaaataaaataaaataatccacctttcttgatttttggcattgaacacacacccttcaagtc |
8014501 |
T |
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| Q |
167 |
ctgttttgttatgagctggtcaaacgtgggtgaattttacactatagttatacttataccctcctccatctggtcccatgtataaacaaaatgtttggag |
266 |
Q |
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| T |
8014500 |
ctgttttgtcatgagctggtcaaacgtgggtgaattttacactatagt-----ttata-cctc--ccatctggtcccatgtataaacaaaatgtttggag |
8014409 |
T |
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| Q |
267 |
tttttaaatttc-aattataagaaaatgttaaacattttaagatatattttttactttcctg |
327 |
Q |
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| T |
8014408 |
ttttttaatctcaaattataagaaaatgctaaacattttaagatatattttttactttcctg |
8014347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 8015769 - 8015704
Alignment:
| Q |
6 |
aataaatagataattaacattatattttcctt-agaaaaacattagatttctgtttacatggattt |
70 |
Q |
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| T |
8015769 |
aataaatagataattaacattatattttccttaaaaaaaacattagatttccgtttacatgaattt |
8015704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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