View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_61 (Length: 327)
Name: NF14117_low_61
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 35999350 - 35999660
Alignment:
| Q |
1 |
ttatatgattttcttcaattattagttgtatcggtatgtccgtgtctatgtctatgtttcatatagaataatatgattaattaaataa---aagagaatg |
97 |
Q |
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| T |
35999350 |
ttatatgattttcttaaattattagttgtatcggtatgcccgtgtttatatctgtgtttcatagagaataatatgattaattaaataataaaagagaatg |
35999449 |
T |
|
| Q |
98 |
aaaacatacagtgattcccggggtagaagaaggtgaagaagaagtgatannnnnnnnnnnnnnnnnacgattattgatatcatgtagacgaagatggtga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| |
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| T |
35999450 |
aaaacatacagtgattcccggggtagaagaaggtgaagaagaagtgatattgttgttgttgtt---atgattattgatatcatgtagacgaagatgatga |
35999546 |
T |
|
| Q |
198 |
tggttgttgttgttgttattggtaatatttccttcaacatcaacaacgttatcaacaaaccgtgttgcatcttgatgctgcctgagaaacccatgatgat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35999547 |
tggttgttgttgttgttattggtaatatttccttcaacatcaacaacgttatcaacaaaccgtgttccatcttgatgctgcctgagaaacccatgatgat |
35999646 |
T |
|
| Q |
298 |
tttgctccaaattc |
311 |
Q |
| |
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|||||||||||||| |
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| T |
35999647 |
tttgctccaaattc |
35999660 |
T |
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