View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_65 (Length: 301)
Name: NF14117_low_65
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 12233798 - 12234073
Alignment:
| Q |
11 |
agaaaattcacaacttcgtatgaaccacgaggaaatacaccacatgtaccttgtacttttgttttcacatttcatcacacacgttgatctcatggcatat |
110 |
Q |
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| T |
12233798 |
agaatattcacaacttcgtatgaaccacgaggaaatacaccacatgtaccttgtacttttgttttcacatttcatcacacacgttgatctcatggcatat |
12233897 |
T |
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| Q |
111 |
gctacagccgacagagttttttctaccccatattggatccctttgtttcacatcagaaaaattcaagctcagaaaaattcaagcagtcgtagattactag |
210 |
Q |
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| T |
12233898 |
actacagccgacagagttttttctaccccatattggatccctttgtttcatatcagaaaaattcaagctcggaaaaattcaagcagtcttagattactaa |
12233997 |
T |
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| Q |
211 |
gtacacgtttgaattcactctgggctgttccaaaagtatttctaaacgtttaaaattgattttgatatgtttaaaa |
286 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12233998 |
gtacacgtttaaattcactctgggctgttccaaaagtatttctaaatgtttaaaattgattttgatatgtttaaaa |
12234073 |
T |
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