View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_67 (Length: 294)
Name: NF14117_low_67
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 41974565 - 41974477
Alignment:
| Q |
187 |
caagaggtggctttaggtatttatatgtttgaaggttataaggagacttgcctatcaagttcgtttgattcacgttccatatttaccat |
275 |
Q |
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| T |
41974565 |
caagaggtggctttaggtatttatatgtttgaaggttataaggagacttgcctatcaagttcgtttgattcacgttccatatttaccat |
41974477 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 41974736 - 41974687
Alignment:
| Q |
24 |
atagaatagaacaatgttgaattaataatgaaattatacgcaagcataac |
73 |
Q |
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| T |
41974736 |
atagaatagaacaatgttgaattaataatgaaattatacgcaagcataac |
41974687 |
T |
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