View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_68 (Length: 293)
Name: NF14117_low_68
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2899840 - 2899565
Alignment:
| Q |
1 |
gtctgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaatacc |
100 |
Q |
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| T |
2899840 |
gtctgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaatacc |
2899741 |
T |
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| Q |
101 |
tgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899740 |
tgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccatgca |
2899641 |
T |
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| Q |
201 |
tgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccacca |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899640 |
tgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccacca |
2899565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 44778153 - 44778424
Alignment:
| Q |
5 |
gcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaatacctgac |
104 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
44778153 |
gcacaagaactgttcattttgtaacttttcctaggatggattgtttccttctggacagtctcaatctccaaagcgtccaactcttgatccaaaacctgac |
44778252 |
T |
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| Q |
105 |
aaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccatgcatgaa |
204 |
Q |
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| T |
44778253 |
aaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctggataagagatatcttcaaagttggaattttcccatgcatgaa |
44778352 |
T |
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| Q |
205 |
aataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccacca |
276 |
Q |
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||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44778353 |
aataccagtcagatcaagttgcacttggaaaccaacataaacattggctcggttaatggttggtgaccacca |
44778424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 39875007 - 39875276
Alignment:
| Q |
5 |
gcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaatacctgac |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
39875007 |
gcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctgaacagtctcaatctccaaagcgtccaactcttgatccaaaacctgac |
39875106 |
T |
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| Q |
105 |
aaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccatgcatgaa |
204 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
39875107 |
aaagatccatgacaacactc--atggatcttctgccacaagtgagctctgaatatctggatcagagatatcttcaaagttggaattttcccatgcatgaa |
39875204 |
T |
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| Q |
205 |
aataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccacca |
276 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39875205 |
aataccagtcagatctagctgcacttggaaaccaacataaacattggctcggttaatggttggtgaccacca |
39875276 |
T |
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