View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_69 (Length: 292)
Name: NF14117_low_69
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_69 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 48535987 - 48536263
Alignment:
| Q |
13 |
aatatcaaaagcatgcataacgagataaactaaaatagaaatgaatgaacttgaaatccaataaacagctaaaagcttaacttagagtttgttttgtttg |
112 |
Q |
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| T |
48535987 |
aatatcaaaagcatgcataacgagataaactaaaatagaaatgaatgaacttgaaatccaataaacagctaaaagcttaacttagagtttgttttgtttg |
48536086 |
T |
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| Q |
113 |
ttccatgaaccaaccaacaataacaagacatactatactggaatgcttttataaacagcctaaaccaaagaacaacgtaacaacagaactaggctaggct |
212 |
Q |
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| T |
48536087 |
ttccatgaaccaaccaacaataacaagacatactatactggaatgcttttataaacagcctaaaccaaagaacaacgtaacaacagaactaggctaggct |
48536186 |
T |
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| Q |
213 |
ggtgctggtgctgttgccggtggcgccacagttgagaggatgtaagttaccacagtgaataatattgaacataagccaca |
292 |
Q |
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| T |
48536187 |
ggtgctggtgctgttgccggtggcgctacagttgagaggatgtaagttaccacagtgaataata---aacataagccaca |
48536263 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 48533165 - 48533247
Alignment:
| Q |
98 |
agtttgttttgtttgttccatgaacc-aaccaacaataac---aagacatactatactggaatgcttttataaacagcctaaa |
176 |
Q |
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| T |
48533165 |
agtttgttttgtttgttccatgaaccaaaccaacaataacaaaaacatatactatactagaatgcttttagaaacagcctaaa |
48533247 |
T |
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