View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_70 (Length: 290)
Name: NF14117_low_70
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 48536255 - 48536530
Alignment:
| Q |
1 |
taagccacatagagatgtaagataccccaatagcctgaggacccagaatctacgagtgttgatctgatctatgtgagagaggtttcctccaaggcaactg |
100 |
Q |
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| T |
48536255 |
taagccacatagagatgtaagataccc-aatagcctgaggacccggaatctacgagtgttgatctgatctatgtgagagaggtttcctccaaggcaactg |
48536353 |
T |
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| Q |
101 |
aagaaggcttaacttgcgaagaagcaaattggtacaaaagatattaatacctcagtcatcgtattgggattggaatgacagacgggattggaatcacaga |
200 |
Q |
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| T |
48536354 |
aagaaggcttaacttgcgaagaagcaaattggtacaaaagatattagtaccttagtcatcgtattgggattggaatgacagacgggattggaatcacaga |
48536453 |
T |
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| Q |
201 |
ctgcta-----actgctagtgccacatagcccgcaacacagtttaacccggcccaccacttgaagtaagagacgtaa |
272 |
Q |
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| T |
48536454 |
ctgctaaagctactgctagtgcaacatagcccgcaacgcagtttaacccggcccaccacttgaagtaagagacgtaa |
48536530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 48533322 - 48533452
Alignment:
| Q |
1 |
taagccacatagagatgtaagataccccaatagcctgaggacccagaatctacgagtgttgatctgatctatgtgagagaggtttcctccaaggcaactg |
100 |
Q |
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|||||||||||||||||||||| ||||||||| | || ||| | ||| || ||||||||||||||||| |||||||||||| || | | |||| | | |
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| T |
48533322 |
taagccacatagagatgtaagagaccccaataacttgcggatgcggaaggtatgagtgttgatctgatctttgtgagagaggtctcttgcgaggctaaag |
48533421 |
T |
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| Q |
101 |
aagaaggcttaacttgcgaagaagcaaattg |
131 |
Q |
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| T |
48533422 |
aagaaggcgccacttgcaaagaagcaaattg |
48533452 |
T |
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