View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_71 (Length: 284)
Name: NF14117_low_71
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 6543299 - 6543029
Alignment:
| Q |
1 |
tttgctttggaactctatacagctcttagttcagaagctggaatcatagttttctgggacaatgagaggattggaagtggagatcaagaaataccaacat |
100 |
Q |
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| T |
6543299 |
tttgctttggaactctatacagctcttagttcacaagctgaaatcattgttttctgggacgattacaggattggatttggagatcaagaagtaccaacct |
6543200 |
T |
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| Q |
101 |
ccgtgctgaatgtcattgaacattgcaaacttggtgtagtcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataac |
200 |
Q |
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| T |
6543199 |
cggtgctgaatgtgattgcagattccaaagttgttgtagtcatattatcaaagaattatacgcattctagatggtgtcttcaagaattggagaaaataac |
6543100 |
T |
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| Q |
201 |
tgagtgttaccgagccaaagatggacccgttgttttacctgttttctatgatggtgtccattcccccagta |
271 |
Q |
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| T |
6543099 |
ccagtgttaccgaaccaaagatggtcccgttgttttacctgtgttctatgatggtgtccattcccccagta |
6543029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 103 - 268
Target Start/End: Original strand, 6737583 - 6737748
Alignment:
| Q |
103 |
gtgctgaatgtcattgaacattgcaaacttggtgtagtcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactg |
202 |
Q |
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| T |
6737583 |
gtgctgaatgtgattgaagattgcaaagttgttgtagtcgtattatcaaagaattatactaattctagatggtgtcttcaagaattggagaaaataactg |
6737682 |
T |
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| Q |
203 |
agtgttaccgagccaaagatggacccgttgttttacctgttttctatgatggtgtccattccccca |
268 |
Q |
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| T |
6737683 |
agtgttaccgaactaaagatggtcccattgttttacctttgttctatgatggtgtctattccccca |
6737748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 6736057 - 6736141
Alignment:
| Q |
9 |
ggaactctatacagctcttagttcagaagctggaatcatagttttctgggacaatgagaggattggaagtggagatcaagaaata |
93 |
Q |
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| T |
6736057 |
ggaactctatacggctcttagttcagaagttggaatcattgttttctgggacaatgagaggattggaagtggagatcgagaaata |
6736141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 6503226 - 6503166
Alignment:
| Q |
140 |
tcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataac |
200 |
Q |
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| T |
6503226 |
tcatattttcaaagaattatactaaatcaagatggtgtcttcaagaattggagaaaataac |
6503166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 6506730 - 6506673
Alignment:
| Q |
143 |
tattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataac |
200 |
Q |
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| T |
6506730 |
tattttcaaagaattattttaattcaagatggtgtcttcaagaattggagaaaataac |
6506673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 6594125 - 6594015
Alignment:
| Q |
103 |
gtgctgaatgtcattgaacattgcaaacttggtgtagtcatattatcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactg |
202 |
Q |
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| T |
6594125 |
gtgctgaatgtaattcaagactgcaaagtcgctgtagtcttgttttcaaaaaattatactaattcaagttcgtgtatacaagaattggagaaaataactc |
6594026 |
T |
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| Q |
203 |
agtgttaccga |
213 |
Q |
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| T |
6594025 |
agtgttgccga |
6594015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 6646090 - 6646249
Alignment:
| Q |
49 |
gttttctgggacaatgagaggattggaagtggagatcaagaaataccaacatccgtgctgaatgtcattgaacattgcaaacttggtgtagtcatattat |
148 |
Q |
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| T |
6646090 |
gttttctgggatgatgagaagcttggaagcggtgatcgaggaataccaacctcaattttgaatgttatagaagattgcaaagttgctgtaatagtatttt |
6646189 |
T |
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| Q |
149 |
caaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactgagtgtt |
208 |
Q |
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| T |
6646190 |
caagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgtt |
6646249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 6747960 - 6748019
Alignment:
| Q |
148 |
tcaaagaattatacgaattcaagatggtgtcttcaagaactggagaaaataactgagtgt |
207 |
Q |
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| T |
6747960 |
tcaaagaaatatactgaatcaagctggtgtcttcaggaattggagaaaataactgagtgt |
6748019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6524095 - 6523998
Alignment:
| Q |
1 |
tttgctttggaactctatacagctcttagttcagaagctggaatcatagttttctgggacaatgagaggattggaagtggagatcaagaaataccaac |
98 |
Q |
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| T |
6524095 |
tttgctctgcaactctacacggctcttagttcagaggctagagtttctgttttctgggacaatgcaaggcttggaagtggagatcgacaaatatcaac |
6523998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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