View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_74 (Length: 270)
Name: NF14117_low_74
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_74 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 43196191 - 43196072
Alignment:
| Q |
95 |
aagataatcagctatgtcagttgaacaagtagggcatttcataatgtttttccgtctctgcaaactgcgaccactttgagatgccctcttcctgatgtaa |
194 |
Q |
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| T |
43196191 |
aagataatcagctatgtcagttgaacaagtagggcatttcataatgttcttttgtgtccgcaaagcgcggccactttgggatgccctattcctaatataa |
43196092 |
T |
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| Q |
195 |
ctttgtacagaaaaagcacc |
214 |
Q |
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| T |
43196091 |
ctttggccagaaaaggcacc |
43196072 |
T |
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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 43191631 - 43191735
Alignment:
| Q |
95 |
aagataatcagctatgtcagttgaacaagtagggcatttcataatgtttttccgtctctgcaaactgcgaccactttgagatgccctcttcctgatgtaa |
194 |
Q |
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|||||| |||||||||||||||| ||| | ||| |||||||||||||| ||| || || |||||||||| |||||||||| || ||| |||||||| || |
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| T |
43191631 |
aagatactcagctatgtcagttgcacaggaaggacatttcataatgttcttctgtgtccgcaaactgcgtccactttgagttgtcctgttcctgatatag |
43191730 |
T |
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| Q |
195 |
ctttg |
199 |
Q |
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||||| |
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| T |
43191731 |
ctttg |
43191735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 19106237 - 19106192
Alignment:
| Q |
223 |
tcgtatctcactcctagtttaggagcataagagaggaacgtttttccc |
270 |
Q |
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| T |
19106237 |
tcgtatctcactcctagtttaggagcata--agaggaacgtttttccc |
19106192 |
T |
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