View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_76 (Length: 259)
Name: NF14117_low_76
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 50390263 - 50390036
Alignment:
| Q |
17 |
ttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390263 |
ttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcaga |
50390164 |
T |
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| Q |
117 |
gtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390163 |
gtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaaca |
50390064 |
T |
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| Q |
217 |
agtgaaccggtgtttgcaaaagactgag |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
50390063 |
agtgaaccggtgtttgcaaaagactgag |
50390036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 50393535 - 50393310
Alignment:
| Q |
19 |
atataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagt |
118 |
Q |
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||||| |||||||||| ||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
50393535 |
atataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagt |
50393436 |
T |
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| Q |
119 |
aaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaag |
218 |
Q |
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| T |
50393435 |
aaagctgtgtgattattgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagtcacaag |
50393336 |
T |
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| Q |
219 |
tgaaccggtgtttgcaaaagactgag |
244 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
50393335 |
tgaaccagtgtttgcaaaagactgag |
50393310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 50385116 - 50384891
Alignment:
| Q |
19 |
atataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagt |
118 |
Q |
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||||| |||||||||| ||||||||| || |||||||| |||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
50385116 |
atatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatagcagagt |
50385017 |
T |
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| Q |
119 |
aaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaag |
218 |
Q |
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| T |
50385016 |
aaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaag |
50384917 |
T |
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| Q |
219 |
tgaaccggtgtttgcaaaagactgag |
244 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
50384916 |
tgaaccagtgtttgcaaaagactgag |
50384891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 50407106 - 50406923
Alignment:
| Q |
61 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatcctt |
160 |
Q |
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||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
50407106 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataacctt |
50407007 |
T |
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| Q |
161 |
ttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgag |
244 |
Q |
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||| ||| ||||| ||| | || |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
50407006 |
ttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgag |
50406923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 24223995 - 24223903
Alignment:
| Q |
78 |
caaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcc |
170 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||||||| |
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| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataacatttaagaattcc |
24223903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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