View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_78 (Length: 256)
Name: NF14117_low_78
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 16978294 - 16978043
Alignment:
| Q |
1 |
atttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaatttaggaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16978294 |
atttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggaca |
16978195 |
T |
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| Q |
101 |
ctctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttggg |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16978194 |
ctctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttggg |
16978095 |
T |
|
| Q |
201 |
aacagattcagcgggaatgttgttagagagtcgcagctactgatgatgtcca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16978094 |
aacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
16978043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17030166 - 17029915
Alignment:
| Q |
1 |
atttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaatttaggaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17030166 |
atttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggaca |
17030067 |
T |
|
| Q |
101 |
ctctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttggg |
200 |
Q |
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| T |
17030066 |
ctctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttggg |
17029967 |
T |
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| Q |
201 |
aacagattcagcgggaatgttgttagagagtcgcagctactgatgatgtcca |
252 |
Q |
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| T |
17029966 |
aacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
17029915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17048504 - 17048253
Alignment:
| Q |
1 |
atttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaatttaggaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17048504 |
atttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggaca |
17048405 |
T |
|
| Q |
101 |
ctctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttggg |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17048404 |
ctctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttggg |
17048305 |
T |
|
| Q |
201 |
aacagattcagcgggaatgttgttagagagtcgcagctactgatgatgtcca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17048304 |
aacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
17048253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 17109622 - 17109390
Alignment:
| Q |
5 |
aggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaatttaggacactct |
104 |
Q |
| |
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||||||||||||||| | ||| ||||| |||| || ||| || || ||||| |||| |||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
17109622 |
aggaagtgattttaactcctctaattttgaaagataaaactgctgaagcctgggtgcagacaatcctccatttggaaatgatgcaaatttaggacactct |
17109523 |
T |
|
| Q |
105 |
ccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaagatttgggaaca |
204 |
Q |
| |
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||||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||| || ||| |||||||| ||||||| |
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| T |
17109522 |
tcaattaagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaacatcaagagtgtcaagattcgggaaca |
17109423 |
T |
|
| Q |
205 |
gattcagcgggaatgttgttagagagtcgcagc |
237 |
Q |
| |
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| || || ||||| || ||||||||||| |||| |
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| T |
17109422 |
gtttgagagggaaggtcgttagagagtcacagc |
17109390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 17024506 - 17024305
Alignment:
| Q |
1 |
atttaggaagtgattttaaatt-----ctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaattta |
95 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||| ||||||||| | ||||| | |||| ||||| | || || |||| | |||| | | |
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| T |
17024506 |
atttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaacttggagcagacgatccttccttgggtaatgttccaaaataa |
17024407 |
T |
|
| Q |
96 |
ggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaagat |
195 |
Q |
| |
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||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| ||||||||||| || | ||||||||| | ||||| ||||||||| |
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| T |
17024406 |
ggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaacgccgagataatcaagat |
17024307 |
T |
|
| Q |
196 |
tt |
197 |
Q |
| |
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|| |
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|
| T |
17024306 |
tt |
17024305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 17089778 - 17089577
Alignment:
| Q |
1 |
atttaggaagtgattttaaatt-----ctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaattta |
95 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||| ||||||||| | |||| | |||| ||||| | || || |||| | |||| | | |
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| T |
17089778 |
atttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaatttggagcagacgatccttccttgggtaatgttccaaaataa |
17089679 |
T |
|
| Q |
96 |
ggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaagat |
195 |
Q |
| |
|
||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| ||||||||||| || | ||||||||| | ||||| ||||||||| |
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| T |
17089678 |
ggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaacgccgagataatcaagat |
17089579 |
T |
|
| Q |
196 |
tt |
197 |
Q |
| |
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|| |
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|
| T |
17089578 |
tt |
17089577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 17035268 - 17035072
Alignment:
| Q |
1 |
atttaggaagtgattttaaatt-----ctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgattcaaattta |
95 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||| ||||||||| | ||||| | |||| ||||| | || || |||| | |||| | | |
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| T |
17035268 |
atttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaacttggagcagacgatccttccttgggtaatgttccaaaataa |
17035169 |
T |
|
| Q |
96 |
ggacactctccaattgagagagttgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactaccacacttataaaggtcgagaaaatcaa |
192 |
Q |
| |
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||||||| | |||||||||| | | ||| ||||||| |||||||||| ||| ||||||||||| || | ||||||||| | ||||| |||||| |
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| T |
17035168 |
ggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaacgccgagataatcaa |
17035072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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