View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_low_80 (Length: 253)

Name: NF14117_low_80
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_low_80
NF14117_low_80
[»] chr6 (7 HSPs)
chr6 (1-235)||(34150853-34151088)
chr6 (1-235)||(34163469-34163704)
chr6 (46-124)||(22840645-22840723)
chr6 (46-124)||(22845418-22845496)
chr6 (144-234)||(22840712-22840804)
chr6 (144-234)||(22845485-22845577)
chr6 (1-124)||(15526679-15526804)
[»] chr3 (6 HSPs)
chr3 (1-124)||(5746854-5746977)
chr3 (1-124)||(5783813-5783936)
chr3 (144-234)||(5746773-5746865)
chr3 (144-234)||(5783732-5783824)
chr3 (46-124)||(19000247-19000325)
chr3 (144-234)||(19000166-19000258)
[»] chr2 (2 HSPs)
chr2 (13-122)||(27474354-27474463)
chr2 (144-235)||(27474454-27474547)
[»] chr7 (4 HSPs)
chr7 (46-124)||(14232153-14232231)
chr7 (46-124)||(14236927-14237005)
chr7 (144-236)||(14232220-14232314)
chr7 (144-236)||(14236994-14237088)
[»] chr1 (4 HSPs)
chr1 (46-121)||(34022107-34022182)
chr1 (32-122)||(3973758-3973849)
chr1 (145-235)||(34022026-34022114)
chr1 (1-29)||(34022179-34022207)
[»] chr4 (1 HSPs)
chr4 (1-122)||(5550607-5550727)
[»] chr8 (1 HSPs)
chr8 (1-122)||(33630620-33630740)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34150853 - 34151088
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34150853 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 34150952  T
Q  101 catctgcatctagttagttagaatggttttctc-nnnnnnnnnngttagttagaatggtgatgagttggcactaatgtgtatataactcaataatgaacc 199  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34150953 catctgcatctagttagttagaatggttttctcaaaaaaaaaaagttagttagaatggtgatgagttggcactaatgtgtatataactcaataatgaacc 34151052  T
Q  200 ttcacaagctaatgaaaatcagttacaagttttctc 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  34151053 ttcacaagctaatgaaaatcagttacaagttttctc 34151088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34163469 - 34163704
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34163469 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 34163568  T
Q  101 catctgcatctagttagttagaatggttttctc-nnnnnnnnnngttagttagaatggtgatgagttggcactaatgtgtatataactcaataatgaacc 199  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34163569 catctgcatctagttagttagaatggttttctcaaaaaaaaaaagttagttagaatggtgatgagttggcactaatgtgtatataactcaataatgaacc 34163668  T
Q  200 ttcacaagctaatgaaaatcagttacaagttttctc 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  34163669 ttcacaagctaatgaaaatcagttacaagttttctc 34163704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 22840645 - 22840723
Alignment:
Q  46 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  22840645 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaat 22840723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 22845418 - 22845496
Alignment:
Q  46 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  22845418 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaat 22845496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 22840712 - 22840804
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaa--taatgaaccttcacaagctaatgaaaatcagttacaagttttct 234  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||  ||||||||||| |||||  |||||||||||||||||||||||||    
T  22840712 gttagttagaatagtgatgagctggcactaatgtgtatataactgaatgtaatgaacctttacaagtcaatgaaaatcagttacaagttttct 22840804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 22845485 - 22845577
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaa--taatgaaccttcacaagctaatgaaaatcagttacaagttttct 234  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||  ||||||||||| |||||  |||||||||||||||||||||||||    
T  22845485 gttagttagaatagtgatgagctggcactaatgtgtatataactgaatgtaatgaacctttacaagtcaatgaaaatcagttacaagttttct 22845577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 15526804 - 15526679
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    |||||||| ||||||||||||||||  ||| ||| | |||||||| ||||||||||| ||||| |||||||||||||||||||  || || |||||||||    
T  15526804 tatcaacacatgaagaaaataaagacaaataagaaagcttggcgcacaagttaactagttagatgtatttgcatttacatttccattttatttgtaattt 15526705  T
Q  101 --catctgcatctagttagttagaat 124  Q
      ||| | ||||||||||||||||||    
T  15526704 cacatttacatctagttagttagaat 15526679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5746977 - 5746854
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||    
T  5746977 tatcaatatataaagaaaataaagagcaatgagataacttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtatttt 5746878  T
Q  101 catctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||    
T  5746877 catctgcatctagttagttagaat 5746854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5783936 - 5783813
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||    
T  5783936 tatcaatatataaagaaaataaagagcaatgagataacttggcgcacaagttaactaattagaagcatttgcatttacattccatttctaattgtatttt 5783837  T
Q  101 catctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||    
T  5783836 catctgcatctagttagttagaat 5783813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 5746865 - 5746773
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttct 234  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5746865 gttagttagaatagtgatgagctggcactaatgtgtatataactcaatgcaatgaaccttcacaagctaatgaaaatcagttacaagttttct 5746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 5783824 - 5783732
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttct 234  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5783824 gttagttagaatagtgatgagctggcactaatgtgtatataactcaatgcaatgaaccttcacaagctaatgaaaatcagttacaagttttct 5783732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 19000325 - 19000247
Alignment:
Q  46 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  19000325 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatttgcatctagttagttagaat 19000247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 19000258 - 19000166
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaa--taatgaaccttcacaagctaatgaaaatcagttacaagttttct 234  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||  ||||||||||| |||||  |||||||||||||||||||||||||    
T  19000258 gttagttagaatagtgatgagctggcactaatgtgtatataactgaatgtaatgaacctttacaagtaaatgaaaatcagttacaagttttct 19000166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 27474354 - 27474463
Alignment:
Q  13 aagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatcta 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  27474354 aagaaaataaagagcaatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacatttcatttctaattgtaatttcacatgcatcta 27474453  T
Q  113 gttagttaga 122  Q
    ||||||||||    
T  27474454 gttagttaga 27474463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 27474454 - 27474547
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttctc 235  Q
    ||||||||||   |||||||| || ||||||||||||||||||| |||  ||||||| |||||||||||||||||||||||||||| |||||||    
T  27474454 gttagttagaggagtgatgagctgacactaatgtgtatataactgaatgtaatgaacgttcacaagctaatgaaaatcagttacaaattttctc 27474547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 14232153 - 14232231
Alignment:
Q  46 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  14232153 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaat 14232231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 14236927 - 14237005
Alignment:
Q  46 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttagaat 124  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  14236927 gcaagttaactaattagaagtatttgcatttgcatttcatttctaactgtaatttcatctgcatctagttagttagaat 14237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 14232220 - 14232314
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaa--taatgaaccttcacaagctaatgaaaatcagttacaagttttctct 236  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||  ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  14232220 gttagttagaatagtgatgagctggcactaatgtgtatataactgaatgtaatgaacctttacaagccaatgaaaattagttacaagttttctct 14232314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 14236994 - 14237088
Alignment:
Q  144 gttagttagaatggtgatgagttggcactaatgtgtatataactcaa--taatgaaccttcacaagctaatgaaaatcagttacaagttttctct 236  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||  ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  14236994 gttagttagaatagtgatgagctggcactaatgtgtatataactgaatgtaatgaacctttacaagccaatgaaaattagttacaagttttctct 14237088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 34022182 - 34022107
Alignment:
Q  46 gcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaatttcatctgcatctagttagttag 121  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||    
T  34022182 gcaaattaactaattagaagcatttgcatctacatttcatttctaattataatttcatctccatctaattagttag 34022107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 3973758 - 3973849
Alignment:
Q  32 agataacttggcgcgcaagttaactaattagaagtatttgcatttac-atttcatttctaattgtaatttca-tctgcatctagttagttaga 122  Q
    |||||||||||| ||||||||||||||||||| | ||||| |||||| |||||||||| ||||||||||||| | ||||| ||||||||||||    
T  3973758 agataacttggcacgcaagttaactaattagatgcatttgtatttacaatttcatttc-aattgtaatttcattttgcatttagttagttaga 3973849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 34022114 - 34022026
Alignment:
Q  145 ttagttagaatggtgatgagttggcactaatgtgtatataactcaat--aatgaaccttcacaagctaatgaaaatcagttacaagttttctc 235  Q
    |||||||| || |||||||| ||||||||||    ||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||||    
T  34022114 ttagttaggatagtgatgagctggcactaat----atataactcaatgtaatgaaccttcacaaactaatgaaaatcagttacaaattttctc 34022026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34022207 - 34022179
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaa 29  Q
    |||||||||||||||||||||||||||||    
T  34022207 tatcaacatatgaagaaaataaagagcaa 34022179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5550607 - 5550727
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    |||||||||||| |||||||||||   ||| |  || |||||||||||||||||||||||||| | |||||||||||   || ||||| | ||||||||     
T  5550607 tatcaacatatggagaaaataaaggaaaataacctagcttggcgcgcaagttaactaattagatgcatttgcatttatgattaatttc-acttgtaatta 5550705  T
Q  101 catctgcatctagttagttaga 122  Q
    ||| | ||||||||||||||||    
T  5550706 catttacatctagttagttaga 5550727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33630740 - 33630620
Alignment:
Q  1 tatcaacatatgaagaaaataaagagcaatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacatttcatttctaattgtaattt 100  Q
    |||||||||| |||||||||||||   ||  |  || ||||||| |||||||||||||||||| | ||||||||||||  || ||||| | ||||||||     
T  33630740 tatcaacatacgaagaaaataaaggaaaagaacctagcttggcgtgcaagttaactaattagatgcatttgcatttacgattaatttc-acttgtaatta 33630642  T
Q  101 catctgcatctagttagttaga 122  Q
    ||| | ||||||||||||||||    
T  33630641 catttacatctagttagttaga 33630620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University