View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_81 (Length: 251)
Name: NF14117_low_81
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_81 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 35804009 - 35803770
Alignment:
| Q |
10 |
aagaatattagaaaacaagcttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaagttgcaactgatnnnn |
109 |
Q |
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| T |
35804009 |
aagaaaattagaaaacaaacttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaaattgcaactgataaaa |
35803910 |
T |
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| Q |
110 |
nnnnnntgataacaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaaaatgataaatc |
209 |
Q |
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| T |
35803909 |
aaaa--tgacaacaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaaaatgataaatc |
35803812 |
T |
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| Q |
210 |
tggaattgagtatagggagtagggtttgcacatcatcttcca |
251 |
Q |
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| T |
35803811 |
tggaattgagtatagggagtagggtttgcacatcatcttcca |
35803770 |
T |
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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 55695696 - 55695874
Alignment:
| Q |
16 |
attagaaaacaagcttttgtaaagggattttaagaaataaaaccacattatcaaaaggcaagttaaagagccttaaaagt-tgcaactgatnnnnnnnnn |
114 |
Q |
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| T |
55695696 |
attagaaaacatgtttttggaaagggattttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactaatg-------- |
55695787 |
T |
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| Q |
115 |
ntgataacaaaaataatgcaattttgaattaaaaagttggcttgaattttgtttttctcttctgaaaggaagggacaaaaacaa-aatgataa |
206 |
Q |
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| T |
55695788 |
------acaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataa |
55695874 |
T |
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