View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14117_low_83 (Length: 248)
Name: NF14117_low_83
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_83 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
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|
| [»] scaffold0975 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
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| [»] scaffold0064 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 40771259 - 40771028
Alignment:
| Q |
17 |
atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40771259 |
atgtaacatctctaagattggaagtagtcaatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatt |
40771160 |
T |
|
| Q |
117 |
tcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40771159 |
tcctaaatatgtgtaagacataagtgggtttgatgtaaaattataaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttg |
40771060 |
T |
|
| Q |
217 |
ttaaattcaacttcatgactattcccatatcc |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
40771059 |
ttaaattcaacttcatgactattcacatatcc |
40771028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 20217218 - 20217366
Alignment:
| Q |
37 |
gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca |
136 |
Q |
| |
|
|||||||| |||||||| || | ||||||||| || |||| ||||||||| |||| |||| | |||| || |||||||| |||||||| |||||||||| |
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|
| T |
20217218 |
gaagtagttaatctatgctaccttggatattcaatttttgttgtagaaccactgaaaattttgatttgaaaaacactattacctaaatacgtgtaagaca |
20217317 |
T |
|
| Q |
137 |
taagtgggtttgatgtaatattattaaaatttctgaattcgtgccaacc |
185 |
Q |
| |
|
||||||| |||| ||| ||||||| ||||| | ||||||||||||||| |
|
|
| T |
20217318 |
taagtggatttgttgttatattatagaaattacggaattcgtgccaacc |
20217366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 19287537 - 19287684
Alignment:
| Q |
38 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
137 |
Q |
| |
|
||||||||||| |||| |||| ||||||||| ||| ||| |||||||||| |||||||| | |||| ||| ||||| |||||||||||| ||||||| |
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|
| T |
19287537 |
aagtagtcaatatatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcacctaaatatgtgaaagacat |
19287636 |
T |
|
| Q |
138 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaacc |
185 |
Q |
| |
|
|||||| || ||| |||| || ||||| ||| ||||| |||||||| |
|
|
| T |
19287637 |
aagtggattcattgtgatatgataaaaatctctaaattcatgccaacc |
19287684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 27621517 - 27621414
Alignment:
| Q |
40 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
139 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| |||| ||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
27621517 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataa |
27621418 |
T |
|
| Q |
140 |
gtgg |
143 |
Q |
| |
|
|||| |
|
|
| T |
27621417 |
gtgg |
27621414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 8331820 - 8332051
Alignment:
| Q |
17 |
atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8331820 |
atgtaacatctctaagattggaagtagtcaatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatt |
8331919 |
T |
|
| Q |
117 |
tcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttg |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8331920 |
tcctaattatgtgtaagacataagtgggtttgatgtaatattataaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtggtattttg |
8332019 |
T |
|
| Q |
217 |
ttaaattcaacttcatgactattcccatatcc |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
8332020 |
ttaaattcaacttcatgactattcacatatcc |
8332051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 17021054 - 17020856
Alignment:
| Q |
36 |
ggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagac |
135 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||| ||| | |||||| ||||| | || | || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
17021054 |
ggaagtagttaatctgtgataacgtggatattcgttatttggtgcagaaccgttgaagagtttgattatgaatatactatttcctacatatgtgtaagac |
17020955 |
T |
|
| Q |
136 |
ataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatga |
234 |
Q |
| |
|
|| ||||| |||||||||||||||| |||| | |||| | || |||||| ||| || |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
17020954 |
attagtggatttgatgtaatattataaaaaaatttgaacttgtcccaaccggttgtaaggattggcatgagtatagatttgttaaattcaacttcatga |
17020856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 14573502 - 14573330
Alignment:
| Q |
17 |
atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt |
116 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||| | |||||||| | ||||| | ||| | ||||| || | | |||||||||||||||| |
|
|
| T |
14573502 |
atgtaacatctttgagattggaagtagccaatctatgatagcgtggatatttaatggttgttgcagaccatttgaaaatgtcgatttggaatacactatt |
14573403 |
T |
|
| Q |
117 |
tcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgt |
189 |
Q |
| |
|
|| ||||||||| || ||||||| ||| || | |||| | || ||| ||| |||| ||||||||||||||| |
|
|
| T |
14573402 |
tcttaaatatgtttaggacataattggaatttttttaatttgataaaagtttttgaactcgtgccaaccttgt |
14573330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 39319258 - 39319362
Alignment:
| Q |
38 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
137 |
Q |
| |
|
|||||||||||||||| |||| | ||||||| ||| ||| |||||||||| |||||||| | |||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
39319258 |
aagtagtcaatctatggtaacgtcgatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcagctaaatatgtgaaagacat |
39319357 |
T |
|
| Q |
138 |
aagtg |
142 |
Q |
| |
|
||||| |
|
|
| T |
39319358 |
aagtg |
39319362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 19777685 - 19777457
Alignment:
| Q |
17 |
atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt |
116 |
Q |
| |
|
||||||||||| |||| | ||||||||||||| |||||| | ||||||||| ||||||| ||||| || |||| ||||| |||||||| |||||| |
|
|
| T |
19777685 |
atgtaacatctttaagtcttgaagtagtcaatcgatgatagcgtggatattcatttgttggtgtagatccggtgaaaatttgaatttggaatgtactatt |
19777586 |
T |
|
| Q |
117 |
tcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttg |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||| |||||| |||| | || ||||||||||||| |||| |
|
|
| T |
19777585 |
tcctaaatatgtgtaagacataagtaggtttgatataatattataaacatttctgaattggtgccatccttccctaagcattggcattagtatagatttg |
19777486 |
T |
|
| Q |
217 |
ttaaattcaacttcatgactattcccata |
245 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |
|
|
| T |
19777485 |
ttaaattcaacttcatgattatttccata |
19777457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 245
Target Start/End: Complemental strand, 19785476 - 19785319
Alignment:
| Q |
88 |
ttgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
187 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||| || ||||||| || ||| | |||| | || ||| ||| |||| ||||||||||||| |
|
|
| T |
19785476 |
ttgaaaatgtggatttggaatacactatttcctaaatatgtttaggacataattgaaattgttttaatttgataaaagtttttgaactcgtgccaacctt |
19785377 |
T |
|
| Q |
188 |
gtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata |
245 |
Q |
| |
|
|| | |||||||| ||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19785376 |
gtttcagtattggtattagcataattttgttaaattcaacttcatgactatttccata |
19785319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 20529163 - 20529360
Alignment:
| Q |
38 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
137 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||| ||| |||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
20529163 |
aagtagtcaatctatggtaatgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
20529262 |
T |
|
| Q |
138 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac |
235 |
Q |
| |
|
|||||| || |||| |||| || ||||| ||| |||| |||||||| || |||||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
20529263 |
aagtggattcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac |
20529360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 4254811 - 4255008
Alignment:
| Q |
38 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
137 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||| ||| |||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
4254811 |
aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
4254910 |
T |
|
| Q |
138 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac |
235 |
Q |
| |
|
|||||| || |||| |||| || ||||| ||| |||| |||||||| || |||||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
4254911 |
aagtggattcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac |
4255008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 33548996 - 33548799
Alignment:
| Q |
48 |
tctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggttt |
147 |
Q |
| |
|
||||||||| | ||||||||| ||| ||| |||||||||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||| |
|
|
| T |
33548996 |
tctatgatatcgtggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggattt |
33548897 |
T |
|
| Q |
148 |
gatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata |
245 |
Q |
| |
|
|| || |||| || |||| |||||||| ||||||||||| || || |||||||| || | | ||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
33548896 |
gaagttatatgataaaaaaatctgaattggtgccaaccttccgtaagcattggcataagcatcaatttgttaaattgaacttgatgactatttccata |
33548799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 26229495 - 26229299
Alignment:
| Q |
48 |
tctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggttt |
147 |
Q |
| |
|
||||||||| | ||||||||| ||| | || |||||||||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||| |
|
|
| T |
26229495 |
tctatgatatcgtggatattcatttttggt-gtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggattt |
26229397 |
T |
|
| Q |
148 |
gatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata |
245 |
Q |
| |
|
|| || |||| || |||| |||||||| ||||||||||| || || |||||||| || | | ||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
26229396 |
gaagttatatgataaaaaaatctgaattggtgccaaccttccgtaagcattggcataagcatcaatttgttaaattgaacttgatgactatttccata |
26229299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 21897781 - 21897978
Alignment:
| Q |
38 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
137 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||| ||| |||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
21897781 |
aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
21897880 |
T |
|
| Q |
138 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac |
235 |
Q |
| |
|
|||||| || |||| |||| || ||||| ||| |||| |||||||| || |||||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
21897881 |
aagtggattcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac |
21897978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 14802874 - 14802978
Alignment:
| Q |
38 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
137 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||| ||||||| |||||| |||||||||||| ||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
14802874 |
aagtagtcaacctatggtaacttggatattcatttgttggtgtagaagcattgaatatttttatttggaatatgctattacctaaatatgtgaaagacat |
14802973 |
T |
|
| Q |
138 |
aagtg |
142 |
Q |
| |
|
||||| |
|
|
| T |
14802974 |
aagtg |
14802978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 245
Target Start/End: Original strand, 23961420 - 23961605
Alignment:
| Q |
60 |
tggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatatta |
159 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||||| | |||| | |
|
|
| T |
23961420 |
tggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaaggtatatga |
23961519 |
T |
|
| Q |
160 |
ttaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata |
245 |
Q |
| |
|
| |||| |||||||| ||||||||||| ||| ||||||||||| || | ||||||||| | ||||| ||||||||| ||||| |
|
|
| T |
23961520 |
taaaaaaatctgaattggtgccaaccttctgtaagtattggcataagcatacatttgttaaactgaacttgatgactatttccata |
23961605 |
T |
|
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Target: scaffold0975 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0975
Description:
Target: scaffold0975; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 3663 - 3516
Alignment:
| Q |
40 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
139 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| |||| ||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
3663 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataa |
3564 |
T |
|
| Q |
140 |
gtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
187 |
Q |
| |
|
|||| || |||| | || || ||||| ||||||||||||||||||| |
|
|
| T |
3563 |
gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt |
3516 |
T |
|
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Target: scaffold0014 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 134185 - 133957
Alignment:
| Q |
17 |
atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt |
116 |
Q |
| |
|
|||||| |||| ||||| ||||||||| ||||||||| ||||||||| ||| ||| |||||| ||||||| |||| | |||||||| |||||| |
|
|
| T |
134185 |
atgtaagatctttaagacaggaagtagtatgtctatgatattgtggatattcattttttggtgtagaatcattgaagattttgatttggaatgtactatt |
134086 |
T |
|
| Q |
117 |
tcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttg |
216 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||||| || |||| || |||| | |||||| ||||||||||| || |||||| |||| || | |||| |
|
|
| T |
134085 |
acccaaatatgtgaaagacataagtggatttgaagttatatgataaaaaaatatgaattggtgccaaccttctggaagtattagcataagcatacatttg |
133986 |
T |
|
| Q |
217 |
ttaaattcaacttcatgactattcccata |
245 |
Q |
| |
|
||||||| ||||| |||| |||| ||||| |
|
|
| T |
133985 |
ttaaattgaacttgatgattatttccata |
133957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 816 - 669
Alignment:
| Q |
40 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
139 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| | || ||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
816 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaaatttaatttggaaatgactattatctagatatgtgaaagacataa |
717 |
T |
|
| Q |
140 |
gtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
187 |
Q |
| |
|
|||| || |||| | || || ||||| ||||||||||||||||||| |
|
|
| T |
716 |
gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt |
669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 23050824 - 23050677
Alignment:
| Q |
40 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
139 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| |||| ||||||| |||||| ||| |||| || ||||||||| |
|
|
| T |
23050824 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatatgaaagacataa |
23050725 |
T |
|
| Q |
140 |
gtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
187 |
Q |
| |
|
|||| || |||| | || || ||||| ||||||||||||||||||| |
|
|
| T |
23050724 |
gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt |
23050677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 118980 - 119178
Alignment:
| Q |
36 |
ggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagac |
135 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||| || ||| | |||||| ||||| | || | || ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
118980 |
ggaagtagttaatctgtgataacgtggatattcattatttggtgcagaaccgttgaagagtttgattatgaatatactatgtcctacatatgtgtaagac |
119079 |
T |
|
| Q |
136 |
ataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatga |
234 |
Q |
| |
|
|| ||||| |||||||||||||||| |||| || |||| | || |||||| ||| || |||||||| | | |||||||||||||||||||||| |
|
|
| T |
119080 |
attagtggatttgatgtaatattataaaaaattatgaacttgtcccaaccggttgtaaggattggcatgatgatagatttgttaaattcaacttcatga |
119178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 143631 - 143828
Alignment:
| Q |
37 |
gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca |
136 |
Q |
| |
|
|||||||| ||| ||||||| | ||||||||| || ||| |||||||| ||||| | || | | |||||| ||||||||||| |||||| |||||| |
|
|
| T |
143631 |
gaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaatatactatttcctacatatgtaaaagaca |
143730 |
T |
|
| Q |
137 |
taagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatga |
234 |
Q |
| |
|
| ||||| |||||||| ||||||| | |||||||||| | || |||||| | | | ||||||||| || | |||||||||||||||||||||| |
|
|
| T |
143731 |
ttagtggatttgatgttatattataataatttctgaacttgtcccaaccccttataattattggcatgagcatagatttgttaaattcaacttcatga |
143828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 18059338 - 18059535
Alignment:
| Q |
37 |
gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca |
136 |
Q |
| |
|
|||||||| ||| ||||||| | ||||||||| || ||| |||||||| ||||| | || | | |||||| ||||||||||| |||||| |||||| |
|
|
| T |
18059338 |
gaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaatatactatttcctacatatgtaaaagaca |
18059437 |
T |
|
| Q |
137 |
taagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatga |
234 |
Q |
| |
|
| ||||| |||||||| ||||||| | |||||||||| | || |||||| | | | ||||||||| || | |||||||||||||||||||||| |
|
|
| T |
18059438 |
ttagtggatttgatgttatattataataatttctgaacttgtcccaaccccctataattattggcatgagcatagatttgttaaattcaacttcatga |
18059535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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