View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_85 (Length: 246)
Name: NF14117_low_85
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8067735 - 8067656
Alignment:
| Q |
1 |
aacaaacaaactgcttaactacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatgtaag |
80 |
Q |
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| T |
8067735 |
aacaaacaaactgcttaactacaactttaattgtaattatttttgtcacaatatatatttatatcttaaaaatatgtaag |
8067656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 8067542 - 8067505
Alignment:
| Q |
191 |
attgatccgaacaacagtacaataaaatatgttaaact |
228 |
Q |
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| T |
8067542 |
attgatccgaacaacagtacaataaaatatgtcaaact |
8067505 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 12146206 - 12146264
Alignment:
| Q |
18 |
actacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatg |
76 |
Q |
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| T |
12146206 |
actacaactttaattgtaattatttttgtcacaatatatatttatatcttaaaaatatg |
12146264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 44278533 - 44278475
Alignment:
| Q |
18 |
actacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatg |
76 |
Q |
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| T |
44278533 |
actacaattttaattgtaattatttttgtcgcaatatatatttatatcttaaaaatatg |
44278475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 36148629 - 36148563
Alignment:
| Q |
9 |
aactgcttaactacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatg |
76 |
Q |
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| T |
36148629 |
aactgctcaactacaacttta-ttgtaattatttttctcacaatatatatttagatcttaaaaatatg |
36148563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 27669365 - 27669401
Alignment:
| Q |
18 |
actacaactttaattataattatttttgtcacaatat |
54 |
Q |
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| T |
27669365 |
actacaactttaattgtaattatttttgttacaatat |
27669401 |
T |
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