View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_low_88 (Length: 243)

Name: NF14117_low_88
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_low_88
NF14117_low_88
[»] chr5 (6 HSPs)
chr5 (1-240)||(20478338-20478576)
chr5 (29-115)||(14011409-14011496)
chr5 (67-187)||(8920101-8920220)
chr5 (33-95)||(42509720-42509782)
chr5 (30-91)||(31748454-31748515)
chr5 (103-187)||(21922110-21922193)
[»] scaffold0085 (1 HSPs)
scaffold0085 (26-119)||(22742-22835)
[»] chr6 (6 HSPs)
chr6 (28-133)||(21418248-21418353)
chr6 (28-115)||(21467933-21468020)
chr6 (49-187)||(34441975-34442111)
chr6 (29-116)||(21388309-21388396)
chr6 (64-96)||(21418410-21418442)
chr6 (64-96)||(21468093-21468125)
[»] scaffold0160 (1 HSPs)
scaffold0160 (44-131)||(26499-26586)
[»] chr4 (6 HSPs)
chr4 (46-119)||(1840668-1840741)
chr4 (29-91)||(39158223-39158285)
chr4 (31-187)||(42062525-42062680)
chr4 (29-119)||(18316027-18316117)
chr4 (69-118)||(7209375-7209424)
chr4 (100-172)||(31641528-31641599)
[»] chr7 (6 HSPs)
chr7 (29-117)||(49103480-49103568)
chr7 (29-119)||(28249461-28249551)
chr7 (29-94)||(31487306-31487371)
chr7 (75-187)||(47448849-47448960)
chr7 (132-172)||(2469729-2469769)
chr7 (191-227)||(10614399-10614435)
[»] chr2 (7 HSPs)
chr2 (33-119)||(1040307-1040391)
chr2 (29-172)||(6511448-6511590)
chr2 (69-187)||(9194452-9194570)
chr2 (67-172)||(6646861-6646965)
chr2 (67-119)||(40443139-40443191)
chr2 (67-119)||(40504316-40504368)
chr2 (67-119)||(44018330-44018382)
[»] chr8 (5 HSPs)
chr8 (29-168)||(35153057-35153197)
chr8 (64-149)||(7612921-7613005)
chr8 (67-187)||(3946263-3946382)
chr8 (56-114)||(5849486-5849544)
chr8 (67-171)||(37657028-37657131)
[»] chr1 (3 HSPs)
chr1 (29-91)||(47642498-47642560)
chr1 (65-111)||(45008091-45008137)
chr1 (67-172)||(45065831-45065935)
[»] chr3 (4 HSPs)
chr3 (56-119)||(34307459-34307522)
chr3 (29-119)||(4494128-4494218)
chr3 (67-119)||(48346916-48346968)
chr3 (191-227)||(51764729-51764765)
[»] scaffold0034 (1 HSPs)
scaffold0034 (32-93)||(22694-22755)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20478576 - 20478338
Alignment:
Q  1 tcattcacaggctaatgatttaaaaagaaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgact 100  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  20478576 tcattcacaggctaatgagttaaaacgaaatgttattcgaaaaaccactttttgaaacaacttattggacaaccaaaatatacaaagaaatgtaatgact 20478477  T
Q  101 gacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcacagaggttgtcataaaaggttgagttaatg 200  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478476 gacacaaaaaccaaagcaatgaagaaag-aaagtaagaatacaaagtgattatgagagagaaagttgtcacagaggttgtcataaaaggttgagttaatg 20478378  T
Q  201 cacatttgtaacttgacatttaaaaaacatatatattctt 240  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  20478377 cacatttgtaacttgacatttaaaaaaaaaatatattctt 20478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 14011496 - 14011409
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggac-aaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaa 115  Q
    ||||||||| ||| ||||||||||  ||||||||| || ||| |||||||||||||||| |||| ||| || ||||||||||||||||    
T  14011496 aatgttatttgaacaaccacttttgaagacaactcttttgaccaaccaaaatatacaaaaaaatataaagattgacacaaaaaccaaa 14011409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 8920220 - 8920101
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 166  Q
    |||||||||||||||| |||||||||| |    || |||||||||||||||||   ||| |||||| | ||||||  | |||| | ||||||||||||||    
T  8920220 ggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaaaa-tgagaatatgatgtgagtatgagagagaaagtt 8920122  T
Q  167 gtcacagaggttgtcataaaa 187  Q
    |||||| | ||||||| ||||    
T  8920121 gtcacaaaagttgtcacaaaa 8920101  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 42509782 - 42509720
Alignment:
Q  33 ttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaa 95  Q
    ||||| ||| || ||||| |||||| |||| ||| |||||||||||||| |||||||||||||    
T  42509782 ttatttgaacaatcacttgttgagagaacttattagacaaccaaaatatgcaaagaaatgtaa 42509720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 31748515 - 31748454
Alignment:
Q  30 atgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaat 91  Q
    |||||||| ||| || || |||||| ||||||| ||||||||| |||| |||||||||||||    
T  31748515 atgttatttgaacaatcattttttgtgacaacttattggacaatcaaattatacaaagaaat 31748454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 21922110 - 21922193
Alignment:
Q  103 cacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcacagaggttgtcataaaa 187  Q
    |||||||||||||||||   ||| |||||| ||||||||  | |||| | |||||||||||||||||||| | ||||||| ||||    
T  21922110 cacaaaaaccaaagcaatagagagagaaaa-taagaatatgatgtgagtatgagagagaaagttgtcacaaacgttgtcacaaaa 21922193  T

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Target: scaffold0085 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 22742 - 22835
Alignment:
Q  26 agaaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    |||||||||||| ||| ||| ||||||| |||||||| |||||||||||||| ||||||||||||||||  || ||||||||||||||||||||    
T  22742 agaaatgttatttgaacaacaactttttcagacaactaattggacaaccaaagtatacaaagaaatgtatcgattgacacaaaaaccaaagcaa 22835  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 21418248 - 21418353
Alignment:
Q  28 aaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaa 127  Q
    |||||||||| ||| ||||||||||| | | || | |||||| ||||||||||||||||||||||||| || |||||||||||||||| ||| ||| | |    
T  21418248 aaatgttatttgaataaccactttttaaaataatttattggataaccaaaatatacaaagaaatgtaaggattgacacaaaaaccaaaacaatgaaaaga 21418347  T
Q  128 gaaaaa 133  Q
    ||||||    
T  21418348 gaaaaa 21418353  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 21467933 - 21468020
Alignment:
Q  28 aaatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaa 115  Q
    |||||||||| ||| || |||||||| | | || | |||||||||||||||||||||||||||||||| || |||| |||||||||||    
T  21467933 aaatgttatttgaataatcactttttaaaataatttattggacaaccaaaatatacaaagaaatgtaaggattgactcaaaaaccaaa 21468020  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 34441975 - 34442111
Alignment:
Q  49 tttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtg 148  Q
    ||||| |||||||| ||||||||| |||||| || |||||||||||| ||  | ||||||||||||||||| |  || | | |||  | ||||||| |||    
T  34441975 tttttaagacaacttattggacaatcaaaatgtataaagaaatgtaaggatcgtcacaaaaaccaaagcaatg--gagatataaagtataatacaatgtg 34442072  T
Q  149 actgtgagagagaaagttgtcacagaggttgtcataaaa 187  Q
    | | ||||||||||| |||||||| | ||||||||||||    
T  34442073 agtatgagagagaaaattgtcacaaaagttgtcataaaa 34442111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 21388309 - 21388396
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaag 116  Q
    ||||||||| ||| ||||||||||| | | || | |||| |||| ||||||||| |||||||||||| || ||||||||||| |||||    
T  21388309 aatgttatttgaacaaccactttttaaaataatttattgcacaatcaaaatatataaagaaatgtaaggattgacacaaaaatcaaag 21388396  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 21418410 - 21418442
Alignment:
Q  64 attggacaaccaaaatatacaaagaaatgtaat 96  Q
    |||||||||||||||||||||||||||||||||    
T  21418410 attggacaaccaaaatatacaaagaaatgtaat 21418442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 21468093 - 21468125
Alignment:
Q  64 attggacaaccaaaatatacaaagaaatgtaat 96  Q
    |||||||||||||||||||||||||||||||||    
T  21468093 attggacaaccaaaatatacaaagaaatgtaat 21468125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 26586 - 26499
Alignment:
Q  44 accactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaa 131  Q
    |||||||||| |||||||| |||||| |||||||||||||||| |||||||| || ||||| ||||| |||| ||| ||||| |||||    
T  26586 accacttttttagacaacttattggataaccaaaatatacaaacaaatgtaaggattgacataaaaatcaaaacaatgaagagagaaa 26499  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 1840741 - 1840668
Alignment:
Q  46 cactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    |||||||||||||| || ||| ||||| |||||||| ||||||||||||| || ||||||||||| ||||||||    
T  1840741 cactttttgagacatcttattagacaatcaaaatatgcaaagaaatgtaaggattgacacaaaaatcaaagcaa 1840668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 39158285 - 39158223
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaat 91  Q
    ||||||||| ||| ||||| || ||| ||||||| |||||||||||||| |||||||||||||    
T  39158285 aatgttatttgaacaaccatttattgtgacaacttattggacaaccaaattatacaaagaaat 39158223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 42062525 - 42062680
Alignment:
Q  31 tgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgact-gacacaaaaaccaaagcaacgaagaaaga 129  Q
    ||||||| ||| ||||| ||| || |||||||  | ||||||||||||||||||||||||||| | | || | |||||||| |||||||| ||||| ||     
T  42062525 tgttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaagaaatgtga-gtctaggcacaaaaatcaaagcaatgaagagag- 42062622  T
Q  130 aaaataagaatacaaagtgactgtgagagagaaagttgtcacagaggttgtcataaaa 187  Q
    ||||| | |||| || || | | ||||||| |||||||||| | | ||||||||||||    
T  42062623 aaaatgaaaatataatgtaagtatgagagaaaaagttgtcataaaagttgtcataaaa 42062680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 18316117 - 18316027
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    ||||||||| ||| ||||| || ||  |||||||  ||||||||||||| ||||||||||||| ||   | ||||||||||| ||||||||    
T  18316117 aatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaa 18316027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 7209424 - 7209375
Alignment:
Q  69 acaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagca 118  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||    
T  7209424 acaaccaaaatatacaaagaaatgtaagttttgccacaaaaaccaaagca 7209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 31641528 - 31641599
Alignment:
Q  100 tgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcaca 172  Q
    ||||||||||| |||||||| | ||| |||||  ||| |||| || |||| ||||||||||||||||||||||    
T  31641528 tgacacaaaaatcaaagcaatggagacagaaag-taaaaatataatgtgagtgtgagagagaaagttgtcaca 31641599  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 49103480 - 49103568
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgac-tgacacaaaaaccaaagc 117  Q
    ||||||||| ||| ||||| ||  ||||||||||  | ||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  49103480 aatgttatttgaataaccatttcatgagacaacttgtgggacaaccaaaatatacaaagaaatgt-atgtcttgacacaaaaaccaaagc 49103568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 28249461 - 28249551
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    ||||||||| ||| ||||| || ||| |||||||  ||||||||| ||| ||||||||||||| |||  | ||||||||||| ||||||||    
T  28249461 aatgttatttgaacaaccatttcttgtgacaactttttggacaactaaattatacaaagaaatttaagtagtgacacaaaaatcaaagcaa 28249551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 31487371 - 31487306
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgta 94  Q
    ||||||||| ||| ||||||||| || ||||||| || | ||||||||||| ||||||||||||||    
T  31487371 aatgttatttgaacaaccactttatgtgacaacttatggaacaaccaaaatttacaaagaaatgta 31487306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 47448960 - 47448849
Alignment:
Q  75 aaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttgtcacaga 174  Q
    ||||||||||||||||| ||   | || |||||||||||||||||   |||||||||  ||| || |||| |||| | |||||||||||||||||||| |    
T  47448960 aaaatatacaaagaaatttaggtagtggcacaaaaaccaaagcaatagagaaagaaag-taaaaacacaatgtgagtatgagagagaaagttgtcacaaa 47448862  T
Q  175 ggttgtcataaaa 187  Q
     ||||||| ||||    
T  47448861 agttgtcaaaaaa 47448849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 2469769 - 2469729
Alignment:
Q  132 aataagaatacaaagtgactgtgagagagaaagttgtcaca 172  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
T  2469769 aataagaatacaatgtgagtatgagagagaaagttgtcaca 2469729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 10614399 - 10614435
Alignment:
Q  191 tgagttaatgcacatttgtaacttgacatttaaaaaa 227  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  10614399 tgagtaaatgcacatttgtaagttgacatttaaaaaa 10614435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 1040307 - 1040391
Alignment:
Q  33 ttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    ||||| ||| || |||||||||| ||||||  | | ||||||||||||||||||||||| ||  ||| |||||||||||||||||||    
T  1040307 ttatttgaacaatcactttttgatacaacttttggaacaaccaaaatatacaaagaaatata--gacagacacaaaaaccaaagcaa 1040391  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 6511448 - 6511590
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaag 128  Q
    ||||||||| ||| ||||| ||| |  |||||||  | |||||||||||||||| |||||||||| |    ||||||||||||||||||||   ||| ||    
T  6511448 aatgttatttgaacaaccattttgtaggacaacttgtgggacaaccaaaatatagaaagaaatgtgagtcttgacacaaaaaccaaagcaatagagagag 6511547  T
Q  129 aaaaataagaatacaaagtgactgtgagagagaaagttgtcaca 172  Q
     ||||| |||||| || || | | ||||||||||| ||||||||    
T  6511548 -aaaatgagaatataatgtaaatatgagagagaaaattgtcaca 6511590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 9194570 - 9194452
Alignment:
Q  69 acaaccaaaatatacaaagaaatgtaatgact-gacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagttg 167  Q
    ||||||||||||||||||||| ||| | | || | ||||||||||||||||| | ||| || ||||| | |||| || |||| | |||||||||||||||    
T  9194570 acaaccaaaatatacaaagaattgtgaggtctaggcacaaaaaccaaagcaatggagagag-aaaatgaaaatataatgtgagtatgagagagaaagttg 9194472  T
Q  168 tcacagaggttgtcataaaa 187  Q
    ||| | | ||||||| ||||    
T  9194471 tcataaaagttgtcacaaaa 9194452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 6646965 - 6646861
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 166  Q
    |||||||||||||||| |||||||||| |    || |||||||||||||||||   ||| || ||||| ||||||  | |||| | ||||||||||||||    
T  6646965 ggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagag-aaaatgagaatatgatgtgagtatgagagagaaagtt 6646867  T
Q  167 gtcaca 172  Q
    ||||||    
T  6646866 gtcaca 6646861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 40443191 - 40443139
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    |||||||||||||||| |||||||||| |  |  |||||||||||||||||||    
T  40443191 ggacaaccaaaatatataaagaaatgttagtatcgacacaaaaaccaaagcaa 40443139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 40504368 - 40504316
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    |||||||||||||||| |||||||||| |  | ||||||||||| ||||||||    
T  40504368 ggacaaccaaaatatataaagaaatgttagtattgacacaaaaatcaaagcaa 40504316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 44018382 - 44018330
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    |||||||||||||||||| |||||||||     ||||||||||||||||||||    
T  44018382 ggacaaccaaaatatacatagaaatgtatgttttgacacaaaaaccaaagcaa 44018330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 35153197 - 35153057
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaa--tatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaa 126  Q
    ||||||||| ||| ||||| ||||| |||||| | |||| ||||||||||  |||| |||||| ||||| || ||||| ||||| |||| ||||| |||     
T  35153197 aatgttatttgaacaaccatttttttagacaagttattgaacaaccaaaatatatataaagaagtgtaaagattgacataaaaatcaaatcaacggagag 35153098  T
Q  127 agaaaaataagaatacaaagtgactgtgagagagaaagttgt 168  Q
    || ||| ||||||||||| |||| | ||||| | ||||||||    
T  35153097 ag-aaagtaagaatacaacgtgagtatgagataaaaagttgt 35153057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 7612921 - 7613005
Alignment:
Q  64 attggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtga 149  Q
    ||||||||||||||||||||||||||| |||| || ||| | |||||| ||| ||||  |||||| ||| ||||||||||| ||||    
T  7612921 attggacaaccaaaatatacaaagaaacgtaaggattgagagaaaaactaaaacaacagagaaag-aaagtaagaatacaatgtga 7613005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 3946382 - 3946263
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 166  Q
    |||||||||||||||| |||||||||| |    || |||||||||||||||||   ||| |||||| | ||||||  | |||| | ||||||||||||||    
T  3946382 ggacaaccaaaatatagaaagaaatgtgagtcttggcacaaaaaccaaagcaatagagagagaaaa-tgagaatatgatgtgagtatgagagagaaagtt 3946284  T
Q  167 gtcacagaggttgtcataaaa 187  Q
    |||||| | ||||||| ||||    
T  3946283 gtcacaaaagttgtcacaaaa 3946263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 5849486 - 5849544
Alignment:
Q  56 gacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaa 114  Q
    ||||||| ||||||||| |||||||||||||||| | |||  | |||||||||||||||    
T  5849486 gacaacttattggacaatcaaaatatacaaagaagtttaagcattgacacaaaaaccaa 5849544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 37657131 - 37657028
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 166  Q
    ||||||||||||||||  ||||||||| |    || ||||||||||||||||||  ||| |||||| | ||||||  | |||| | ||||||||||||||    
T  37657131 ggacaaccaaaatatagtaagaaatgtgagtcttggcacaaaaaccaaagcaacagagagagaaaa-tgagaatatgatgtgagtatgagagagaaagtt 37657033  T
Q  167 gtcac 171  Q
    |||||    
T  37657032 gtcac 37657028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 47642498 - 47642560
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaat 91  Q
    ||||||||| ||| ||||| |||||| |||||||  ||||||||||||| |||||||||||||    
T  47642498 aatgttatttgaacaaccattttttgggacaacttgttggacaaccaaattatacaaagaaat 47642560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 45008091 - 45008137
Alignment:
Q  65 ttggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaac 111  Q
    |||||||| |||||||||||||||||||||| || ||| ||||||||    
T  45008091 ttggacaatcaaaatatacaaagaaatgtaaggattgatacaaaaac 45008137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 45065831 - 45065935
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaacgaagaaagaaaaataagaatacaaagtgactgtgagagagaaagtt 166  Q
    |||||| ||||||||| |||||||||| |    ||||||||||||||||||||   ||| || ||||| ||||||  | |||| | ||||||||||||||    
T  45065831 ggacaatcaaaatatagaaagaaatgtgaatcttgacacaaaaaccaaagcaatagagagag-aaaatgagaatatgatgtgagtatgagagagaaagtt 45065929  T
Q  167 gtcaca 172  Q
    ||||||    
T  45065930 gtcaca 45065935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 34307459 - 34307522
Alignment:
Q  56 gacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    ||||||| |||||||||||||| ||||||||||||| ||   | ||| ||||||||||||||||    
T  34307459 gacaacttattggacaaccaaattatacaaagaaatttaggtagtgatacaaaaaccaaagcaa 34307522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 4494128 - 4494218
Alignment:
Q  29 aatgttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    ||||||||| ||| ||||| || ||  |||||||  ||||||||||||| ||||||||||||| ||   | ||||||||||| ||||||||    
T  4494128 aatgttatttgaacaaccatttcttatgacaacttgttggacaaccaaattatacaaagaaatttaggtagtgacacaaaaatcaaagcaa 4494218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 48346968 - 48346916
Alignment:
Q  67 ggacaaccaaaatatacaaagaaatgtaatgactgacacaaaaaccaaagcaa 119  Q
    |||||||| |||||||||||||||| | |  | ||||||||||||||||||||    
T  48346968 ggacaacctaaatatacaaagaaatatgaatattgacacaaaaaccaaagcaa 48346916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 51764765 - 51764729
Alignment:
Q  191 tgagttaatgcacatttgtaacttgacatttaaaaaa 227  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  51764765 tgagtaaatgcacatttgtaagttgacatttaaaaaa 51764729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 22755 - 22694
Alignment:
Q  32 gttattcgaaaaaccactttttgagacaactcattggacaaccaaaatatacaaagaaatgt 93  Q
    |||||| ||| ||||| ||| || |||||||  | |||||||||||||||||||||||||||    
T  22755 gttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaagaaatgt 22694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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