View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_9 (Length: 624)
Name: NF14117_low_9
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 155 - 594
Target Start/End: Complemental strand, 31809061 - 31808622
Alignment:
| Q |
155 |
ggtatcataatcccttttttatatccattctttgtttggataaattttcagttattcacggaagttcagtaacacaccatgttatatttcacagaccctt |
254 |
Q |
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| T |
31809061 |
ggtatcataatcccttttttatatccattctttgtttggataaattttcagttattcacggaagttcagtaacacaccatgttatatttcacagaccctt |
31808962 |
T |
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| Q |
255 |
tttacgcaaaattattcactctcacacacatgcactgaaaccaaatctgagctgtagaattttgaattcttgctgtcaatttaaattggaatttttgtat |
354 |
Q |
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| T |
31808961 |
tttacgcaaaattattcactctcacacacatgcactgaaacaaaatctgagctgtagaattttgaattcttgctgtcaatttaaattggaatttttgtat |
31808862 |
T |
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| Q |
355 |
ttttagactgtcctttctgttgttgagtattggcatatgcatatatatgacattgtgtgtattattatgtaacaaatatagaatcaaaatctaaatcatt |
454 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31808861 |
ttttagactgtcctttttgttgttgagtattggcatatgcatatatatgacattgtgtgtattattatgtaacaaatatagaatcaaaatctaaatcatt |
31808762 |
T |
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| Q |
455 |
aatatgcatgcgtgcaatgctatatgagaataagatgtgaatatatgacagtgtaaaacataatagagtcatggtatattgcacgacacacatgcacaca |
554 |
Q |
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| T |
31808761 |
aatatgcatgcgtgcaatgctatatgagaataagatgtgaatatatgacagtgtaaaacataatagagtcatgctatatagcacgacacacatgcacaca |
31808662 |
T |
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| Q |
555 |
ggaatacacacgacaggttgaaacaataaataatttgctc |
594 |
Q |
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| T |
31808661 |
cgaatacacaccacatgttgaaacaacaaataatttgctc |
31808622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 31809204 - 31809134
Alignment:
| Q |
11 |
cataggagagaaagtgtaaagaaaatcaatgcttttaatttttaatgaggtcatctttttctgtcacacac |
81 |
Q |
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| T |
31809204 |
cataggagagaaagtgtaaagaaaatcaatgcttttaatttttaatgaggtcatctttttctgtcacacac |
31809134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 519 - 592
Target Start/End: Original strand, 24904971 - 24905044
Alignment:
| Q |
519 |
agagtcatggtatattgcacgacacacatgcacacaggaatacacacgacaggttgaaacaataaataatttgc |
592 |
Q |
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| T |
24904971 |
agagtcatgctatatagcacgacacacatgcacacacgaatacacacgacaggttgaaacaacaagtaatttgc |
24905044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 519 - 589
Target Start/End: Original strand, 21182461 - 21182531
Alignment:
| Q |
519 |
agagtcatggtatattgcacgacacacatgcacacaggaatacacacgacaggttgaaacaataaataatt |
589 |
Q |
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| T |
21182461 |
agagtcatgctatatagcacgacacacatgcacacacgaatacacacgacagattgaaacaacaagtaatt |
21182531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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