View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_94 (Length: 222)
Name: NF14117_low_94
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 47423146 - 47422973
Alignment:
| Q |
29 |
tttatgttactacgcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaattaattctactcgaaattattatatcctaaaa |
128 |
Q |
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| T |
47423146 |
tttatgttactacgcatatgtttggtttcaattttagagaatcaaaa-tgattttagaggttgcagaattaattctactcgaaattattatatcctaaaa |
47423048 |
T |
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| Q |
129 |
taacatatacag-tagatataaatgagtaaaattatccttttgttataagcatttgctagattaccttttcttttc |
203 |
Q |
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| T |
47423047 |
taacatatacagttagatataaatgagtaaaattat-cttttgttataagcatttgctagattaccttttcttttc |
47422973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47423478 - 47423442
Alignment:
| Q |
1 |
ttatatttctccctctcatatcttttattttatgtta |
37 |
Q |
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| T |
47423478 |
ttatatttctccctctcatatcttttattttatgtta |
47423442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 49829249 - 49829200
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttg |
91 |
Q |
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|||| ||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
49829249 |
gcatgtgtttggtttcaattctagagggtcaaaagtgattctagaggttg |
49829200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 32111891 - 32111934
Alignment:
| Q |
47 |
tgtttggtttcaattttagaggatcaaaagtgattttagaggtt |
90 |
Q |
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||||||||||||||| ||||||||||||||||||| | |||||| |
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| T |
32111891 |
tgtttggtttcaattctagaggatcaaaagtgattcttgaggtt |
32111934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 46870312 - 46870366
Alignment:
| Q |
44 |
atatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt |
98 |
Q |
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||||||||| |||||||||| |||| |||||||||||| |||| |||| |||||| |
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| T |
46870312 |
atatgtttgatttcaattttggagggtcaaaagtgattatagatgttgtagaatt |
46870366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 1872417 - 1872373
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttaga |
86 |
Q |
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| T |
1872417 |
gcatatgtttggttacaattttggaggatcaaaagtgattttaga |
1872373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 27881249 - 27881293
Alignment:
| Q |
44 |
atatgtttggtttcaattttagaggatcaaaagtgattttagagg |
88 |
Q |
| |
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||||||||||||| |||||| |||| ||||||||||||||||||| |
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|
| T |
27881249 |
atatgtttggtttaaatttttgagggtcaaaagtgattttagagg |
27881293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 38453268 - 38453316
Alignment:
| Q |
50 |
ttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| ||||||||| |||||| |
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| T |
38453268 |
ttggtttcaattctagaggatcaaaagtaattctagaggttgtagaatt |
38453316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 45776923 - 45776876
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggt |
89 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||||||||| |||| |
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|
| T |
45776923 |
gcatatgtttggtttcaattttggtgggtcaaaagtgattttaaaggt |
45776876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 2256584 - 2256528
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt |
98 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||| ||||||| |||||| |||||| |
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|
| T |
2256584 |
gcatatgtttggtatcaattatggagggtcaaaagcgattttaaaggttgtagaatt |
2256528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 11302288 - 11302344
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt |
98 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||||| |||| |||| |||||| |
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| T |
11302288 |
gcatatgtttggtttcaattttggagagtcaaaattgattctagaagttgtagaatt |
11302344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 3551529 - 3551568
Alignment:
| Q |
47 |
tgtttggtttcaattttagaggatcaaaagtgattttaga |
86 |
Q |
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|
||||||||||||||||||||||||| ||||||||| |||| |
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| T |
3551529 |
tgtttggtttcaattttagaggatctaaagtgattctaga |
3551568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 30220403 - 30220354
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttg |
91 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
30220403 |
gcatgtgtttgatttcaattttagagagtcaaaagtgattctagaggttg |
30220354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 47978607 - 47978558
Alignment:
| Q |
42 |
gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttg |
91 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||||||||| |||| |||| |
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| T |
47978607 |
gcatatgtttgttttcaattttggagggtcaaaagtgattctagaagttg |
47978558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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