View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_96 (Length: 213)
Name: NF14117_low_96
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 20531482 - 20531665
Alignment:
| Q |
14 |
caaagggagttatcaaacagaagctgagttgaatcagtgtgttctttgctgaacaattctgcaactggaggtggattttcaatgttattcacacgcgatt |
113 |
Q |
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| T |
20531482 |
caaagagagttatcaaacagaagctgagttgaatcagtgtgttctttgctgaacaattctgcaactggaggtggattttcaatgttattcacacgcgatt |
20531581 |
T |
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| Q |
114 |
tcagcgctgaagcaatgcaatccaataaccaactgtcaaattttagttttgggttttgtgtatgtgagaaactagagaggatct |
197 |
Q |
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| T |
20531582 |
tcagcgctgaagcaatgcaatccaataaccaactgtcaaattttagttttgggttttgtgtatgtgagaaactagagaggatct |
20531665 |
T |
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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 28296830 - 28297017
Alignment:
| Q |
10 |
gaagcaaagggagttatcaaacagaagctgagttgaatcagtgtgttctttgctgaacaattctgcaactggaggtggattttcaatgttattcacacgc |
109 |
Q |
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| T |
28296830 |
gaagcaaagagagtgatcaaggagaaggtgagtcgactcagcatgttctttgctgaacaattccactacaggaggtggattttcaatgttattcacacgc |
28296929 |
T |
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| Q |
110 |
gatttcagcgctgaagcaatgcaatccaataaccaactgtcaaattttagttttgggttttgtgtatgtgagaaactagagaggatct |
197 |
Q |
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| T |
28296930 |
gatttcagcgttgaagccatgcaatccaataaccaacgatcaaatttcagttttgagttttgtgtttgagagaaacgagagaggatct |
28297017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 28295930 - 28295743
Alignment:
| Q |
10 |
gaagcaaagggagttatcaaacagaagctgagttgaatcagtgtgttctttgctgaacaattctgcaactggaggtggattttcaatgttattcacacgc |
109 |
Q |
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||||||||| |||| ||||| ||||| ||||| || ||| ||||||||||| |||||||| | ||||||||||||||||||||||| || |||| |
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| T |
28295930 |
gaagcaaagagagtgatcaaggagaaggtgagtcgactcaacatgttctttgctaaacaattccattattggaggtggattttcaatgttatccatacgc |
28295831 |
T |
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| Q |
110 |
gatttcagcgctgaagcaatgcaatccaataaccaactgtcaaattttagttttgggttttgtgtatgtgagaaactagagaggatct |
197 |
Q |
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||||| |||||| |||| |||||||| |||||||||| ||||| || ||||||||||||||||| || |||||| ||| ||||||| |
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| T |
28295830 |
gatttaagcgctaaagccatgcaatctaataaccaacgatcaaaattcagttttgggttttgtgtttgagagaaaggagaaaggatct |
28295743 |
T |
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