View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_1 (Length: 629)
Name: NF14118_high_1
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Complemental strand, 44142503 - 44141899
Alignment:
| Q |
19 |
ttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactaca |
118 |
Q |
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| T |
44142503 |
ttattagggctataaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatggttttattaatttattttcttactaca |
44142404 |
T |
|
| Q |
119 |
gtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagacataattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
44142403 |
gtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcactcaccactgatccctcagggagacataattc |
44142304 |
T |
|
| Q |
219 |
accccatttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44142303 |
accccatttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgaggagcaaaa |
44142204 |
T |
|
| Q |
319 |
catgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtggaaatggg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44142203 |
catgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtggaaatggg |
44142104 |
T |
|
| Q |
419 |
cgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaacttatttctgcaaaatgt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142103 |
cgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaacttatttctgcaaaatgt |
44142004 |
T |
|
| Q |
519 |
aatccaaaagttaaatgtggttatatagtgcagatcgcattttctc----aacaaaacnnnnnnnncattaatggttgtataagatataacctcaggctc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||| |
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| T |
44142003 |
aatccaaaagttaaatgtggttatatagtgcagatcacattttctcaaaaaaaaaaaaaaaaaaaacattaatggttgtataagatataacctcaggctc |
44141904 |
T |
|
| Q |
615 |
ctttg |
619 |
Q |
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||||| |
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| T |
44141903 |
ctttg |
44141899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 50063166 - 50062794
Alignment:
| Q |
19 |
ttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactaca |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50063166 |
ttattagggctgtaaagaatttccatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactaca |
50063067 |
T |
|
| Q |
119 |
gtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggaga-------- |
210 |
Q |
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| T |
50063066 |
gtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcatagttcactcaccactgatccctcagggtgacgtccaca |
50062967 |
T |
|
| Q |
211 |
---cataattcaccccatttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtcc |
307 |
Q |
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| T |
50062966 |
cttcataattcaccccatttccaacctttttctccttacccttatcttttatgatttccagctggattgcggacttttatgttttctgcagcttcagtcc |
50062867 |
T |
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| Q |
308 |
gaggagcaaaacatgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttctttt |
380 |
Q |
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| T |
50062866 |
gaggagcaaaacatgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 402 - 619
Target Start/End: Complemental strand, 50062698 - 50062476
Alignment:
| Q |
402 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaac |
501 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaac |
50062599 |
T |
|
| Q |
502 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc-----aacaaaacnnnnnnnncattaatggttgtata |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | |||||||||||||| |
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| T |
50062598 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaaccttaatggttgtata |
50062499 |
T |
|
| Q |
597 |
agatataacctcaggctcctttg |
619 |
Q |
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||||||||||||||||||||||| |
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| T |
50062498 |
agatataacctcaggctcctttg |
50062476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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