View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_11 (Length: 417)
Name: NF14118_high_11
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 10678881 - 10678568
Alignment:
| Q |
1 |
tagttactactttactgtattacgattgttttgaaaaatgattattgtaaaa-----gtcacttttttgggtaaatagnnnnnnnnnnnaa-aaagtaat |
94 |
Q |
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| T |
10678881 |
tagttactactttactgtattacgatttttttgaaaaatgattattgtaaaattaaagtcacttttttgggtaaatagttttttttttttttaaagtaat |
10678782 |
T |
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| Q |
95 |
actaaaaatatcatggacactcatcttatggtataatttgnnnnnnnnntatcgtcaggttatacgataggcattttttgtgcaacagtggaagatnnnn |
194 |
Q |
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| T |
10678781 |
actataaatatcatggacactcatcttatggtatactttgaaaaaaaaatatcgtcaggttatacgataggcattttttgtgcaacagtggaagataaa- |
10678683 |
T |
|
| Q |
195 |
nnntatatatataattaataccatgattaatctaaaatcttttcccagaactcaagtgatcaatttgttcaacaatttattgaactccctttagagaata |
294 |
Q |
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| T |
10678682 |
----aaatatata--taataccatgattaatctaaaatcttttcccagagctcaagtgatcaatttgttcaacaatttattgaactcactttagagaata |
10678589 |
T |
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| Q |
295 |
cgtgaataacatcagccgatg |
315 |
Q |
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| T |
10678588 |
cgtgaataacatcagccgatg |
10678568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 10678508 - 10678469
Alignment:
| Q |
378 |
catttttagacgaaccaaatcaatataaaagagcatacaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10678508 |
catttttagacgaaccaaatcaatataaaagagcatacaa |
10678469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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