View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_13 (Length: 396)
Name: NF14118_high_13
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 36970401 - 36970798
Alignment:
| Q |
1 |
ttcattttaattgaagtataatttgtatagactaaaatttcttgaacaccaagataaaactgatataaagtctttttagttatatttcttaatggtaaat |
100 |
Q |
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| T |
36970401 |
ttcattttaattgaagtataatttgtatagactaaaattccttgaacaccaagataaaactgatataaagtctttttagttatatttcttaatggtaaat |
36970500 |
T |
|
| Q |
101 |
ctgtgttaaaaaacaaaagaatacaccgatgataatggataactcttttacgtaaacataatatgatttagactaaaattaaaacttaatgatatcacaa |
200 |
Q |
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| T |
36970501 |
ctgtgttaaaaaacaaaagaatacaccgatgataatggaaaactcctttacgtaaacataatatgatttagactaaaatttaaacttaatgatattacaa |
36970600 |
T |
|
| Q |
201 |
aggattcaaataatt----ggacatgttgcttatgtttgttttgcaaagtatatcaattttgacattcattcccaaactcatttgatggattgttttaca |
296 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36970601 |
aggattcaaataattaatgggacatgttggttatgtttgttttgcaaagtatatcaattttgacattcattcccaaactcatttgatggattgttttaca |
36970700 |
T |
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| Q |
297 |
aataagctgctgatagaattatattactttgaacttatgaaatggaatggatagaagttgctatattaattcaaatcaaataaatcgttattttaata |
394 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36970701 |
aataagctgctaatagaattatattactttgaacttatgaaatggaatggatagaagttgctatattaattctaatcaaataaatcgttattttaata |
36970798 |
T |
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