View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_18 (Length: 349)
Name: NF14118_high_18
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_18 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 8058 - 7761
Alignment:
| Q |
18 |
gtttaaggttgagataactgatggcaaccttaaccacaactggcgcaactatacagtgaaacgtacatttgacaaccttgatttgattaagaaatttgtt |
117 |
Q |
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| T |
8058 |
gtttaaggttgagataactgatggcaaccttaaacacaactagcgcaactatacagtgaaacgtacatttgacaaccttgatttgattaagaaatttgtt |
7959 |
T |
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| Q |
118 |
gctttacataagatcagggtagttttgtgattactatccatataatagtcaactgtttcacttcttcgaagcattatcatctgaatccggttaatatgtt |
217 |
Q |
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| T |
7958 |
gctttacataagatcagggtagttttgttattactatccatataatagtcaactgtttcacttcttcgaagcattatcatctgaatccggttaatatgtt |
7859 |
T |
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| Q |
218 |
gtattgtaggtgtgttccgatgaggaagtagttgatgaccctaacgtcaatgtatcgccattgtcaaatgaaccatccgttgaggtgagcggttcaag |
315 |
Q |
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| T |
7858 |
gtattgtaggtgtgttccgatgaggaagtagttgatgaccctaacgtcaatgtatcgccattgtcaaatgaaccatccattgaggtgagcggttcaag |
7761 |
T |
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Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 15454133 - 15454430
Alignment:
| Q |
18 |
gtttaaggttgagataactgatggcaaccttaaccacaactggcgcaactatacagtgaaacgtacatttgacaaccttgatttgattaagaaatttgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15454133 |
gtttaaggttgagataactgatggcaaccttaaacacaactagcgcaactatacagtgaaacgtacatttgacaaccttgatttgattaagaaatttgtt |
15454232 |
T |
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| Q |
118 |
gctttacataagatcagggtagttttgtgattactatccatataatagtcaactgtttcacttcttcgaagcattatcatctgaatccggttaatatgtt |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15454233 |
gctttacataagatcagggtagttttgttattactatccatataatagtcaactgtttcacttcttcgaagcattatcatctgaatccggttaatatgtt |
15454332 |
T |
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| Q |
218 |
gtattgtaggtgtgttccgatgaggaagtagttgatgaccctaacgtcaatgtatcgccattgtcaaatgaaccatccgttgaggtgagcggttcaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15454333 |
gtattgtaggtgtgttccgatgaggaagtagttgatgaccctaacgtcaatgtatcgccattgtcaaatgaaccatccattgaggtgagcggttcaag |
15454430 |
T |
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