View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_2 (Length: 600)
Name: NF14118_high_2
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 9e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 232852 - 233063
Alignment:
| Q |
16 |
tatacctttaactaacctctgaaagggattatctatctcagcaaccgactagtacaatttgaaagagaactcaattggtaactatttctactttctagtg |
115 |
Q |
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| T |
232852 |
tatacctttaactaacctctgaaagggattatctatctcagcaaccgactagtacaatttgaaagagaactcaatt----------tctactttctagtg |
232941 |
T |
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| Q |
116 |
cctataggctcaacaatcaacaacaagttagatgtgtccggtgactaggatatataattcttaagtttaaatattttctatttagtaatgttaaatgaca |
215 |
Q |
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| T |
232942 |
cctatagactcaacaatcaacaacaagttagatgtgtccggtgactaggatatataattcttaagtttaaatattttctatttagtaat----------a |
233031 |
T |
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| Q |
216 |
ttatatctttggcttaaatatatttttggtaa |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
233032 |
ttatatctttggcttaaatatatttttggtaa |
233063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 233154 - 233277
Alignment:
| Q |
339 |
ccaaatgttagagaaagtttgaaaactaaaccacatgactttcaggttgtcaaacacaatattgaaataattcaatctcttttaaaggtgttgcagcaaa |
438 |
Q |
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| T |
233154 |
ccaaatgttagagaaagtttgaaaactaaaccttatgactttcaggttgtcaaacacaatattgaaataatttaatctcttttaaaggtgttgcagcaaa |
233253 |
T |
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| Q |
439 |
ttgttctccttcaaaggcatcaca |
462 |
Q |
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| T |
233254 |
ttgttctccttcaaaggcatcaca |
233277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 511
Target Start/End: Complemental strand, 43005239 - 43005164
Alignment:
| Q |
436 |
aaattgttctccttcaaaggcatcacaacaaaatatctttcaaacgtttatgttcctgtttttgttttcagcattc |
511 |
Q |
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| T |
43005239 |
aaatcgttctccttcaaaggcatcgcattaaaatctctttcaaaagattatgttcttgtattcgttttcaacattc |
43005164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 514
Target Start/End: Complemental strand, 48617226 - 48617134
Alignment:
| Q |
422 |
aaaggtgttgcagcaaattgttctccttcaaaggcatcacaacaaaatatctttcaaacgtttatgttcctgtttttgttttcagcattcctt |
514 |
Q |
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| T |
48617226 |
aaaggtgtcgcaacaaatcgttctctttcaaatgcatcacaacaaaatctcattcaaatgcttatgttcgtgttttcgttttcagcattcctt |
48617134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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