View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_20 (Length: 336)
Name: NF14118_high_20
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 5688955 - 5688791
Alignment:
| Q |
6 |
gagaagcaaaggcaattaggttctgccataatggtcacaagtgttgaaccaaaagttagatatgaattaatcatcattaaatgcaatagtctagaggcta |
105 |
Q |
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| T |
5688955 |
gagaatcaatggcaattaggttctgccataatggtcacaagtgttgatccaaaagttagatatgaattaatcataattaaatgcaatagtctagaggcta |
5688856 |
T |
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| Q |
106 |
aagattgggatttgtgtataaaatgagaaaggtataaggaactaggagcaagaatttttggatcc |
170 |
Q |
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| T |
5688855 |
aagatagggatttgtgtataaaatgagaaaggtataaggaactaggagcaagaatttttggatcc |
5688791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 5961164 - 5961062
Alignment:
| Q |
171 |
atcataactaaattctgca---agcattttcttgttgttacgtgtcttaaaaggtaaatgttaagataatgaactt-gaggaatatgagtaaccccttaa |
266 |
Q |
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| T |
5961164 |
atcataactaaattctgcattaagctttttcttgttgttacgtgtcttaaa-ggtaaatgttaagataatgaactttgaggaatatgagtaaccccttaa |
5961066 |
T |
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| Q |
267 |
taat |
270 |
Q |
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|||| |
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| T |
5961065 |
taat |
5961062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 5956436 - 5956387
Alignment:
| Q |
267 |
taataatagtttggtattggagggcagccgttggtggaaataggtagcaa |
316 |
Q |
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| T |
5956436 |
taatgatagtttggtattggagggcagccgttggtggaaataggtagcaa |
5956387 |
T |
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