View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14118_high_22 (Length: 331)
Name: NF14118_high_22
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 162 - 316
Target Start/End: Complemental strand, 40677412 - 40677258
Alignment:
| Q |
162 |
gcagttgttttgcaaccatgacgagaaggaaggtgaaacttgcctttatctccgataactcggcaaggaaggcaagcttcaataaaagaaagaagggtct |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40677412 |
gcagttgttttgcaaccatgacgagaaggaaggtgaaacttgcctttatctctgataacgcggcaaggaaggcaagcttcaataaaagaaagaagggtct |
40677313 |
T |
|
| Q |
262 |
cataaagaaggtaattgaactgacaacactttgtgatattccggcttgtgctata |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40677312 |
cataaagaaggtaactgaactgacaacactttgtgatattccggcttgtgctata |
40677258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 40705317 - 40705448
Alignment:
| Q |
185 |
agaaggaaggtgaaacttgcctttatctccgataactcggcaaggaaggcaagcttcaataaaagaaagaagggtctcataaagaaggtaattgaactga |
284 |
Q |
| |
|
||||| |||||||| || ||||| || ||||| |||||||||||||||| |||| ||| |||||||||||||||||| |||||||||||| |||||| | |
|
|
| T |
40705317 |
agaagaaaggtgaagctggccttaattcccgatgactcggcaaggaaggcgagctacaacaaaagaaagaagggtctcttaaagaaggtaagtgaactca |
40705416 |
T |
|
| Q |
285 |
caacactttgtgatattccggcttgtgctata |
316 |
Q |
| |
|
| | ||||||||| |||| |||||||||||| |
|
|
| T |
40705417 |
ccattctttgtgatgttccagcttgtgctata |
40705448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 40677530 - 40677450
Alignment:
| Q |
8 |
tcacacgatgacttgtcatatttttaaatggagtatctgatatggatcgttataaaacccgtatgccacggaaaaataacg |
88 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
40677530 |
tcacacgatgacttgtcatattttaaaatggggtaggtgatatggatcgttataaaacccgtaagtcacggaaaattaacg |
40677450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 40802903 - 40802994
Alignment:
| Q |
191 |
aaggtgaaacttgcctttatctccgataactcggcaaggaaggcaagcttcaataaaagaaagaagggtctcataaagaaggtaattgaact |
282 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||||||| || ||| ||| ||||||||||| ||||||||||||| | |||||| |
|
|
| T |
40802903 |
aaggtgaaacttgcatttatctccaatggtgcggcaaggaaggcaacctacaacaaacgaaagaagggtatcataaagaaggtgagtgaact |
40802994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 37921235 - 37921123
Alignment:
| Q |
162 |
gcagttgttttgcaa-ccatgacgagaaggaaggtgaaacttgcctttatctccgataactcggcaaggaaggcaagcttcaataaaagaaagaagggtc |
260 |
Q |
| |
|
|||||||| |||||| ||||||| || | ||||||||||||||| |||||||| ||| | || ||||| ||||||| || || |||||||| |||||| |
|
|
| T |
37921235 |
gcagttgtattgcaagccatgactaggaagaaggtgaaacttgcttttatctctgatgattcagcaagaaaggcaacctataagaaaagaaaaaagggta |
37921136 |
T |
|
| Q |
261 |
tcataaagaaggt |
273 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
37921135 |
tcatcaagaaggt |
37921123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 316
Target Start/End: Complemental strand, 34520562 - 34520436
Alignment:
| Q |
190 |
gaaggtgaaacttgcctttatctccgataactcggcaaggaaggcaagcttcaataaaagaaagaagggtctcataaagaaggtaattgaactgacaaca |
289 |
Q |
| |
|
||||||||||||||||||||||| || | |||||||| ||| || || ||| || |||||||||||| |||| |||||||| | || || || || |
|
|
| T |
34520562 |
gaaggtgaaacttgcctttatcttgaatgattcggcaagaaagagaacctacaacaagagaaagaagggtatcattaagaaggtgagagagctcactact |
34520463 |
T |
|
| Q |
290 |
ctttgtgatattccggcttgtgctata |
316 |
Q |
| |
|
|||||||||||||| || ||||||||| |
|
|
| T |
34520462 |
ctttgtgatattccagcctgtgctata |
34520436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 20856403 - 20856264
Alignment:
| Q |
177 |
ccatgacgagaaggaaggtgaaacttgcctttatctccgataactcggcaaggaaggcaagcttcaataaaagaaagaagggtctcataaagaaggtaat |
276 |
Q |
| |
|
||||||| || | |||||| |||||||| |||||||| || | |||||||| ||||||| || |||||||||||| |||||| |||| |||||||| | |
|
|
| T |
20856403 |
ccatgactaggaagaaggtaaaacttgcttttatctctaatgattcggcaagaaaggcaacctacaataaaagaaaaaagggtatcatcaagaaggttag |
20856304 |
T |
|
| Q |
277 |
tgaactgacaacactttgtgatattccggcttgtgctata |
316 |
Q |
| |
|
||||| || | ||||||| |||||| || ||||||||| |
|
|
| T |
20856303 |
agaactcaccattctttgtggtattccagcatgtgctata |
20856264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University