View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_23 (Length: 309)
Name: NF14118_high_23
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 13874629 - 13874435
Alignment:
| Q |
95 |
tatttttccttaccactacaagtgattaatggcctcattt-cgttgttaattgtgtttacaggaccaagtgatcactacacttgtgaagttcttagtaat |
193 |
Q |
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| T |
13874629 |
tatttgtccttacaacgtcaagtgatcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttgtgaagttcttggtaat |
13874530 |
T |
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| Q |
194 |
tctcattcattctattg-ccataaattgcttgttagcttgtctaatcataacattgatagcatcgatcatttaacttttaactgttttacgggactatc |
291 |
Q |
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| T |
13874529 |
tctcattcattctattgcccataaatattttgctggcttgtcaaatcatagcattgataac----atcatttaattttcaatggttttacgggactatc |
13874435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 13878865 - 13878786
Alignment:
| Q |
13 |
caaaggtaatagatagataacttttctttttattcatgagctgagggctgaggcttttaatgtgtgaatgaatcagagta |
92 |
Q |
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| T |
13878865 |
caaaggtaatagatagataacttttcactttattcatgagctgagggctgaggcttttaatgtgtgaatgaatcagagta |
13878786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 13884566 - 13884475
Alignment:
| Q |
108 |
cactacaagtgattaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
201 |
Q |
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| T |
13884566 |
cactgcaagtaattaatggcttcatttccttgttaattgtgtttatggg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13884475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 13872260 - 13872183
Alignment:
| Q |
122 |
aatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
201 |
Q |
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| T |
13872260 |
aatggccccatttccttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13872183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 12957643 - 12957723
Alignment:
| Q |
119 |
attaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacac-ttgtgaagttcttagtaattctcattc |
201 |
Q |
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| T |
12957643 |
attaatggcctcatttccttgttaattgtgtttatggg---aagtgattactacactttttgaagttcttggtaattgtcattc |
12957723 |
T |
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