View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_high_26 (Length: 291)

Name: NF14118_high_26
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_high_26
NF14118_high_26
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-275)||(103494-103774)


Alignment Details
Target: scaffold0009 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 103494 - 103774
Alignment:
Q  1 ttatctgcacaacattggtatagcagaattggaatttacctcattggtgaaaatgttattggaatttaccttaa---tgttgtgtatgcaaaaatttgaa 97  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  103494 ttatctgcacaacattgatatagcagaattggaatttacctcattggtgaaaatgttattggaatttaccttaatattgttgtgtatgcaaaaatttgaa 103593  T
Q  98 actgtcttattgcagaatagattctatttatgcaaaggaaagttaaatgataacg---nnnnnnnntcaaaatgcttataccacagttctttgtgatcca 194  Q
    |||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||           |||||||| |||||||||||||||||||||||||    
T  103594 actgtcttatcgcagaattgattctatttatgcaaaagaaagtaaaatgataacgaaaaaaaaaaatcaaaatgtttataccacagttctttgtgatcca 103693  T
Q  195 gctgcatcttttcaattcaccatgctcggccgcgtgtggattttgttgttgctgtgaaatattaataagtgtatgttctct 275  Q
    |||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  103694 gctgcatcttttcaattcaccaagctcagccgcgtgttgattttgttgttgctgtgaaatattaataagtgtatgttctct 103774  T

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