View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_high_29 (Length: 264)
Name: NF14118_high_29
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 42 - 257
Target Start/End: Original strand, 2678056 - 2678271
Alignment:
| Q |
42 |
caagccacaactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatggattgttggaa |
141 |
Q |
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| T |
2678056 |
caagccacaactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatggattgttggaa |
2678155 |
T |
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| Q |
142 |
agatatatatgggacagcagtatcgttaagtggactaaaatgtacgaggcaagaaaagatttatgtgataattatgaagcatgtgggataaatggtgttt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2678156 |
agatatatatgggacagcagtatcgttaagtggactaaaatgtacgaggcgagaaaagatttatgtgataattatggagcatgtgggataaatggtgttt |
2678255 |
T |
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| Q |
242 |
gtaatattgatgatgt |
257 |
Q |
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|||||||||||||||| |
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| T |
2678256 |
gtaatattgatgatgt |
2678271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 45 - 257
Target Start/End: Complemental strand, 3052548 - 3052336
Alignment:
| Q |
45 |
gccacaactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatggattgttggaaaga |
144 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3052548 |
gccacaactttcagtaaccaagaatgaggtagtgaattgggatgaacctggagatagattgtcaaggtttatgattagggatgatggattgttggaaaga |
3052449 |
T |
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| Q |
145 |
tatatatgggacagcagtatcgttaagtggactaaaatgtacgaggcaagaaaagatttatgtgataattatgaagcatgtgggataaatggtgtttgta |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3052448 |
tatatatgggacagcagtatcgttaagtggactaaaatgtacgaggcaagaaaagatttatgtgataattatggagcatgtgggataaatggtgtttgta |
3052349 |
T |
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| Q |
245 |
atattgatgatgt |
257 |
Q |
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||||||||||||| |
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| T |
3052348 |
atattgatgatgt |
3052336 |
T |
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