View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14118_high_3 (Length: 592)
Name: NF14118_high_3
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_high_3 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 11170413 - 11170962
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11170413 |
ctccatgcaccggtcaaaaagactcttactgagattgtcgaaaattccacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcg |
11170512 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttat |
218 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
11170513 |
atgtcagtcttattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcgagtttat |
11170612 |
T |
|
| Q |
219 |
gctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgat |
318 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | | |||||||||||| |
|
|
| T |
11170613 |
gttttctcaagaactctttcacaaaatggttcaccatt---gcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgat |
11170709 |
T |
|
| Q |
319 |
atcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtca |
418 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
11170710 |
atcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtca |
11170809 |
T |
|
| Q |
419 |
aagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
518 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170810 |
aggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
11170909 |
T |
|
| Q |
519 |
cattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
11170910 |
cattaaagtatgcaggcacagttataacaacatcctccactattgatccaagg |
11170962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 11209235 - 11209784
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| | ||||||| ||||| || ||||||||||||||| |
|
|
| T |
11209235 |
ctccatgcactggtcaaaaagactcttgttgagatcgtcgaactttgcacgactaatcgttgacaaaaaatctttaccttcatttaaacaatctatctca |
11209334 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttat |
218 |
Q |
| |
|
||| |||| | ||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | |
|
|
| T |
11209335 |
atgttagtcgcagtattgacagaaagtatcctttttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccatttttt |
11209434 |
T |
|
| Q |
219 |
gctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgat |
318 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11209435 |
ccttcctcaagaactctttcacaaaatggttcaccatt---gcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgat |
11209531 |
T |
|
| Q |
319 |
atcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtca |
418 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || || |
|
|
| T |
11209532 |
atcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgcca |
11209631 |
T |
|
| Q |
419 |
aagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
518 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209632 |
aagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
11209731 |
T |
|
| Q |
519 |
cattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
11209732 |
cattaaagtatgcaggcacagttataacaacatcatccactgttgatccaagg |
11209784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 11275798 - 11276346
Alignment:
| Q |
20 |
tccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcga |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||||| | |||||| |||||||| | |
|
|
| T |
11275798 |
tccatgcactggtaaaaaagactcttgttgagatcatcgaactttgcacgactaatcaacgaggagaaatctgtaccttggtttaaacattctatctcaa |
11275897 |
T |
|
| Q |
120 |
tggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttatg |
219 |
Q |
| |
|
||| ||||| | ||||| |||||| | | |||| |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||| |
|
|
| T |
11275898 |
tggtagtctcactattgacagaaagtatcctttttactctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcatttttatg |
11275997 |
T |
|
| Q |
220 |
ctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgata |
319 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
11275998 |
cttcctcaagaactctttcacaaaatggttcaccatt---gcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgata |
11276094 |
T |
|
| Q |
320 |
tcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaa |
419 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
|
|
| T |
11276095 |
tcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaa |
11276194 |
T |
|
| Q |
420 |
agccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtc |
519 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11276195 |
agccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtc |
11276294 |
T |
|
| Q |
520 |
attaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
11276295 |
attaaagtatgcaggcacagttataacaacatcctccactgttaatccaagg |
11276346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 589
Target Start/End: Original strand, 11196566 - 11197133
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
||||||||||| ||| || || |||||||||| || || || |||| ||||||||| |||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
11196566 |
ctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctataccttgatttaaactccctatctca |
11196665 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttat |
218 |
Q |
| |
|
|||| ||| | ||||||| |||||| | | ||||||| |||||||||||| ||||| |||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
11196666 |
atggtggtcgtagtattggaagaaagtatcctttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttat |
11196765 |
T |
|
| Q |
219 |
gctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgat |
318 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
11196766 |
acttcctcgagaactctttcacaaaatggttcaccattgt---attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgat |
11196862 |
T |
|
| Q |
319 |
atcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtca |
418 |
Q |
| |
|
| |||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||| |||||| |||||| ||||| |
|
|
| T |
11196863 |
agcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtca |
11196962 |
T |
|
| Q |
419 |
aagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
518 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
11196963 |
agaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagt |
11197062 |
T |
|
| Q |
519 |
cattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcatctctctcg |
589 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11197063 |
cattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcg |
11197133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 589
Target Start/End: Original strand, 11156113 - 11156680
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
||||||||||| ||| || || |||||||||| || || || |||| |||||||||| |||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
11156113 |
ctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcacgactaatcgatgagtagaaatctataccttgatttaaactctctatctga |
11156212 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttat |
218 |
Q |
| |
|
|||| || | ||||||| |||||| | | ||||||| |||||||||||| ||||| |||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
11156213 |
atggtggttgtaatattggaagaaagtatcctttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttat |
11156312 |
T |
|
| Q |
219 |
gctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgat |
318 |
Q |
| |
|
||| ||| |||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
11156313 |
acttcctcgagaactcattcacaaaatggttcaccattgt---attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgat |
11156409 |
T |
|
| Q |
319 |
atcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtca |
418 |
Q |
| |
|
| |||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| | ||||||||| |||||| |||||| ||||| |
|
|
| T |
11156410 |
agcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtca |
11156509 |
T |
|
| Q |
419 |
aagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
518 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||| | || |||||||||||||||| |
|
|
| T |
11156510 |
agaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagt |
11156609 |
T |
|
| Q |
519 |
cattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcatctctctcg |
589 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
11156610 |
cattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcg |
11156680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 42 - 580
Target Start/End: Original strand, 11199754 - 11200293
Alignment:
| Q |
42 |
tcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcgatggcagtctgattattggatga |
141 |
Q |
| |
|
|||||||||| || || || |||| ||||||||| |||| |||||||| |||||||| ||||| |||||||| |||| ||| | ||||||| || |
|
|
| T |
11199754 |
tcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctaaaccttgatttaaactctctatctcaatggtggtcgtagtattggaaga |
11199853 |
T |
|
| Q |
142 |
aagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttatgctttctcaagaactttttcaca |
241 |
Q |
| |
|
|||| | | ||||||| |||||||||||| |||| |||||||||||||||||||| |||||| ||||||| ||||| ||| ||| |||||| ||||||| |
|
|
| T |
11199854 |
aagtatcctttttgctttctcgcaagcagacttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcaca |
11199953 |
T |
|
| Q |
242 |
aaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtgagaa |
341 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11199954 |
aaatggttcaccattgt---attatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaa |
11200050 |
T |
|
| Q |
342 |
tagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcagctgc |
441 |
Q |
| |
|
| ||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
11200051 |
tggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgc |
11200150 |
T |
|
| Q |
442 |
tgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactgg----cgttgtgagtcattaaagtatgcaggcac |
537 |
Q |
| |
|
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
11200151 |
agaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcac |
11200250 |
T |
|
| Q |
538 |
agttataacaacatccttcactgttgatccaaggtaagcttca |
580 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200251 |
aattataacaacatccttcactgttgatccaaggtaagcttca |
11200293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 580
Target Start/End: Original strand, 11160980 - 11161550
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
||||||||||| ||| || || |||||||||| || || || |||| ||||||||| |||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
11160980 |
ctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctattccttgatttaaactctctatctca |
11161079 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttat |
218 |
Q |
| |
|
|||| ||| | ||||||| |||||| | | ||||||| |||||||||||| |||| |||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
11161080 |
atggtggtcgtagtattggaagaaagtatcctttttgctttctcgcaagcagagttcaacctcctaagggctcttggatctccactaatgtcgattttat |
11161179 |
T |
|
| Q |
219 |
gctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgat |
318 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
11161180 |
acttcctcgagaactctttcacaaaatggttcaccattgt---attatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgat |
11161276 |
T |
|
| Q |
319 |
atcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtca |
418 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| | ||||||||| |||||| |||||| ||||| |
|
|
| T |
11161277 |
agcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtca |
11161376 |
T |
|
| Q |
419 |
aagccatatgcaattgcagctgctgtaggc--------tcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactgg-- |
508 |
Q |
| |
|
| ||||||||||||||| |||| |||||| ||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11161377 |
agaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcg |
11161476 |
T |
|
| Q |
509 |
--cgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
580 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161477 |
tacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttca |
11161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 307 - 580
Target Start/End: Complemental strand, 11241486 - 11241213
Alignment:
| Q |
307 |
cttaacattgatatcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaat |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| || || || | ||||| ||||||||||| ||||| |
|
|
| T |
11241486 |
cttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaaga |
11241387 |
T |
|
| Q |
407 |
ggtttcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagact |
506 |
Q |
| |
|
| |||| ||| || |||||||||||||||| |||| ||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11241386 |
gttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagact |
11241287 |
T |
|
| Q |
507 |
ggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
580 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241286 |
ggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
11241213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 152 - 579
Target Start/End: Original strand, 11132970 - 11133394
Alignment:
| Q |
152 |
tttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttatgctttctcaagaactttttcacaaaatggttca |
251 |
Q |
| |
|
|||||| |||| || |||| ||||| || ||||||||| || ||| |||||| ||||| | ||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
11132970 |
tttgctttctcacatgcagacttcaaccgtctaagggcttttcgatctccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttca |
11133069 |
T |
|
| Q |
252 |
ccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtgagaatagacacgtc |
351 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| ||||| ||| | | ||| |||| || || || ||||||||||||||||| || |
|
|
| T |
11133070 |
ccattgtg---ttatcaaagtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatc |
11133166 |
T |
|
| Q |
352 |
caaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtcaaagccatatgcaattgcagctgctgtaggctca |
451 |
Q |
| |
|
||| |||||||| ||||| ||||| | ||||||| | || ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11133167 |
caatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcg |
11133266 |
T |
|
| Q |
452 |
ttgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat |
551 |
Q |
| |
|
|||| |||||||||||| ||||| || |||||| |||| ||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
11133267 |
ttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacat |
11133366 |
T |
|
| Q |
552 |
ccttcactgttgatccaaggtaagcttc |
579 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
11133367 |
ccttcactgttgatccaaggtaaacttc |
11133394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 11241748 - 11241511
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
||||||||||| ||| || || |||||||||| || || || |||| ||||||||| |||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
11241748 |
ctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatctataccttgatttaaactctctatctca |
11241649 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtac-attttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagttta |
217 |
Q |
| |
|
|||| ||| | ||||||| ||||| | | ||||||| |||||||||||| ||||| |||||||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
11241648 |
atggtggtcgtagtattggaataaagtatccttttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctctactaatgtcgatttta |
11241549 |
T |
|
| Q |
218 |
tgctttctcaagaactttttcacaaaatggttcaccat |
255 |
Q |
| |
|
| ||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
11241548 |
tacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 150 - 392
Target Start/End: Complemental strand, 11314927 - 11314688
Alignment:
| Q |
150 |
attttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttatgctttctcaagaactttttcacaaaatggtt |
249 |
Q |
| |
|
|||||||| |||||||||| | ||||| ||||||||||| | || || |||||| ||||| | ||||| | | || |||| || |||||||| || |
|
|
| T |
11314927 |
attttgctttctcgcaagctgacttcaacctcctaagggatgttaaatctccactaatgtctattttatacctcttccggaacacttccacaaaatattt |
11314828 |
T |
|
| Q |
250 |
caccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgatatcaccattctcaaatgtgagaatagacacg |
349 |
Q |
| |
|
||||||| | ||||| |||||||||||||| |||||||||||||| ||| | | |||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
11314827 |
caccattgt---attattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgagaatagacaca |
11314731 |
T |
|
| Q |
350 |
tccaaagtaccaccacctaagtcaaatatgaaaacatttctac |
392 |
Q |
| |
|
||||||||||| ||||| || || || |||||||||||||||| |
|
|
| T |
11314730 |
tccaaagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 731 - 1277
Alignment:
| Q |
19 |
ctccatgcactggtcaaaaagactcttgttgagatcatcgaaatttggacgactaatcactgaggagaaatcttcaccttgatataaacaatctatctcg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || |||| |||||||||| |||||||||| | |||||| | |||||| |||||||| |
|
|
| T |
731 |
ctccatgcactggttaaaaagactcttgttgagatcatcaaactttgcacgactaatcgacgaggagaaatttgtaccttggtttaaacactctatctca |
830 |
T |
|
| Q |
119 |
atggcagtctgattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactgatgtcgagtttat |
218 |
Q |
| |
|
|||| ||||| | ||||| |||||| | | ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||| |
|
|
| T |
831 |
atggtagtctaagtattgacagaaagtatcctttttgatctctcacaagcagtcttcagcctcctaacggctcttggatctccactaatgtcgattttat |
930 |
T |
|
| Q |
219 |
gctttctcaagaactttttcacaaaatggttcaccattattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaataggcttaacattgat |
318 |
Q |
| |
|
||| || |||||| |||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
931 |
acttccttaagaacactttcacaaaatggttcaccatt---gcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgat |
1027 |
T |
|
| Q |
319 |
atcaccattctcaaatgtgagaatagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatcattaaatggtttcttgtca |
418 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| ||||| |
|
|
| T |
1028 |
atcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtc---catgtgatggttttgtgtca |
1124 |
T |
|
| Q |
419 |
aagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagt |
518 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
1125 |
aagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagt |
1224 |
T |
|
| Q |
519 |
cattaaagtatgcaggcacagttataacaacatccttcactgttgatccaagg |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1225 |
cattaaagtatgcaggcacagttataacaacatcctccactgttgatccaagg |
1277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 496
Target Start/End: Complemental strand, 13333392 - 13333307
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||||| |||||||||||| || || || ||||| ||||||| |||||| || | ||| ||||||||||||||||| |||||| |
|
|
| T |
13333392 |
tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 495
Target Start/End: Complemental strand, 10494310 - 10494226
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
495 |
Q |
| |
|
||||||||| |||||||||||| || || || ||||| ||||||| ||| || || ||||| ||||||||||||||||| ||||| |
|
|
| T |
10494310 |
tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 8382802 - 8382727
Alignment:
| Q |
421 |
gccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||||||| ||||| || || |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8382802 |
gccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 8602216 - 8602291
Alignment:
| Q |
421 |
gccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||||||| |||||||| || |||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
8602216 |
gccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 496
Target Start/End: Original strand, 6789744 - 6789829
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
|||| |||| ||||||||||| ||||| ||||| || ||||||| |||||| |||||||| || |||||||| ||||| |||||| |
|
|
| T |
6789744 |
tcttatcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct |
6789829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 8538282 - 8538353
Alignment:
| Q |
425 |
tatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| ||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8538282 |
tatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 495
Target Start/End: Complemental strand, 8585640 - 8585558
Alignment:
| Q |
413 |
ttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
495 |
Q |
| |
|
||||||| |||||||||||| || || || || || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8585640 |
ttgtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc |
8585558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
| Q |
422 |
ccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaata |
484 |
Q |
| |
|
|||||||||| |||||| || || || ||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata |
29577532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 494
Target Start/End: Original strand, 8628766 - 8628847
Alignment:
| Q |
413 |
ttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat |
494 |
Q |
| |
|
||||||| |||||||||||| || || || || || ||||||| ||| | ||||||||| ||||||||||| ||||| |||| |
|
|
| T |
8628766 |
ttgtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat |
8628847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 496
Target Start/End: Original strand, 8667651 - 8667736
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||||| |||||||||||| || || || ||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||| |
|
|
| T |
8667651 |
tcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct |
8667736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 8581662 - 8581726
Alignment:
| Q |
138 |
atgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttcca |
202 |
Q |
| |
|
|||||||||| | ||| |||||||| ||||||||| ||| ||| |||| |||| ||||||||||| |
|
|
| T |
8581662 |
atgaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttcca |
8581726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 496
Target Start/End: Original strand, 8654683 - 8654767
Alignment:
| Q |
412 |
cttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
|||||||| |||||||||||| || || || ||||| ||||||||||| || || || || || |||||||| ||||| |||||| |
|
|
| T |
8654683 |
cttgtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct |
8654767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 495
Target Start/End: Complemental strand, 8671566 - 8671482
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
495 |
Q |
| |
|
||||||||| |||||||||||| || || || ||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||| |
|
|
| T |
8671566 |
tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc |
8671482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 495
Target Start/End: Original strand, 14703640 - 14703724
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
495 |
Q |
| |
|
||||||||| |||||||||||| || || |||||||| ||||| | || | ||||||||||||||| |||||| |||| ||||| |
|
|
| T |
14703640 |
tcttgtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc |
14703724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 7542510 - 7542543
Alignment:
| Q |
463 |
cataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
7542510 |
cataacattgaggccagcaatggcacccgcatct |
7542543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 496
Target Start/End: Complemental strand, 9335827 - 9335742
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
|||| |||| |||||||||||| || || || ||||| ||||||| ||| || || ||||| ||||||||||||| ||| |||||| |
|
|
| T |
9335827 |
tcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct |
9335742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 495
Target Start/End: Original strand, 30775495 - 30775568
Alignment:
| Q |
422 |
ccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
495 |
Q |
| |
|
||||||||||| || ||||| || |||||||| | ||||| ||||||||| || |||||||| ||||| ||||| |
|
|
| T |
30775495 |
ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc |
30775568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 496
Target Start/End: Original strand, 35132680 - 35132765
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
496 |
Q |
| |
|
||||||||| ||||||||||| || || || ||||| ||||| | || || |||||||||| | |||||||||||||| |||||| |
|
|
| T |
35132680 |
tcttgtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct |
35132765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 495
Target Start/End: Complemental strand, 34466729 - 34466645
Alignment:
| Q |
411 |
tcttgtcaaagccatatgcaattgcagctgctgtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
495 |
Q |
| |
|
||||||||| ||||||||||| || || || || || ||||||| |||| ||| |||||| ||||||||||||| ||| ||||| |
|
|
| T |
34466729 |
tcttgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc |
34466645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University