View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_high_9 (Length: 493)

Name: NF14118_high_9
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_high_9
NF14118_high_9
[»] chr3 (16 HSPs)
chr3 (81-476)||(14223511-14223906)
chr3 (220-476)||(14209608-14209864)
chr3 (257-476)||(14217383-14217602)
chr3 (81-160)||(27903638-27903717)
chr3 (81-173)||(15864839-15864925)
chr3 (81-184)||(25074795-25074899)
chr3 (81-199)||(21211294-21211413)
chr3 (81-160)||(25652005-25652084)
chr3 (81-144)||(12704647-12704710)
chr3 (220-255)||(14202528-14202563)
chr3 (128-184)||(10955000-10955056)
chr3 (81-134)||(24205041-24205094)
chr3 (81-134)||(25365468-25365521)
chr3 (83-144)||(34307770-34307831)
chr3 (81-138)||(52369781-52369838)
chr3 (150-201)||(11610578-11610630)
[»] chr5 (7 HSPs)
chr5 (82-173)||(43554528-43554619)
chr5 (84-144)||(39695989-39696049)
chr5 (82-138)||(25863211-25863267)
chr5 (81-134)||(7997166-7997219)
chr5 (83-132)||(31264446-31264495)
chr5 (91-194)||(36577617-36577719)
chr5 (81-121)||(2577193-2577233)
[»] chr4 (11 HSPs)
chr4 (81-201)||(24343513-24343634)
chr4 (81-202)||(3144584-3144705)
chr4 (81-138)||(20743274-20743331)
chr4 (85-199)||(944602-944717)
chr4 (82-137)||(31243545-31243600)
chr4 (84-138)||(6273953-6274007)
chr4 (81-158)||(8820414-8820491)
chr4 (95-144)||(23386166-23386215)
chr4 (84-121)||(49659536-49659573)
chr4 (81-199)||(18513175-18513294)
chr4 (128-199)||(23292926-23292997)
[»] chr7 (9 HSPs)
chr7 (81-173)||(4017755-4017847)
chr7 (82-138)||(29812660-29812716)
chr7 (85-183)||(7133228-7133327)
chr7 (81-201)||(23751906-23752020)
chr7 (81-197)||(5938478-5938595)
chr7 (81-138)||(43249999-43250056)
chr7 (81-160)||(23930225-23930304)
chr7 (82-128)||(23128667-23128713)
chr7 (81-200)||(38804488-38804608)
[»] chr6 (7 HSPs)
chr6 (81-155)||(17168442-17168516)
chr6 (81-137)||(6389749-6389805)
chr6 (81-199)||(34446571-34446690)
chr6 (81-201)||(26247432-26247552)
chr6 (81-139)||(19602176-19602234)
chr6 (123-199)||(8365448-8365524)
chr6 (122-199)||(10339054-10339131)
[»] chr8 (8 HSPs)
chr8 (81-137)||(13009490-13009546)
chr8 (82-199)||(39820436-39820547)
chr8 (82-138)||(13845241-13845297)
chr8 (89-172)||(26915202-26915285)
chr8 (81-134)||(35431140-35431193)
chr8 (81-138)||(44067522-44067579)
chr8 (82-144)||(40063958-40064020)
chr8 (81-134)||(1676718-1676771)
[»] chr2 (9 HSPs)
chr2 (81-138)||(23354648-23354705)
chr2 (82-138)||(25544488-25544544)
chr2 (81-160)||(24011042-24011121)
chr2 (81-184)||(23354939-23355048)
chr2 (81-136)||(10535757-10535812)
chr2 (123-199)||(35056922-35056998)
chr2 (81-199)||(38919212-38919336)
chr2 (123-201)||(26769565-26769643)
chr2 (85-138)||(11308000-11308053)
[»] chr1 (8 HSPs)
chr1 (81-160)||(42004921-42005000)
chr1 (83-194)||(1486649-1486760)
chr1 (128-199)||(37598879-37598950)
chr1 (81-131)||(11634127-11634177)
chr1 (128-184)||(1815305-1815361)
chr1 (82-115)||(23440017-23440050)
chr1 (123-199)||(47989551-47989627)
chr1 (85-133)||(6573999-6574047)
[»] scaffold0049 (1 HSPs)
scaffold0049 (85-127)||(56932-56974)
[»] scaffold0199 (1 HSPs)
scaffold0199 (81-134)||(1955-2008)
[»] scaffold0512 (1 HSPs)
scaffold0512 (128-199)||(4976-5047)


Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 81 - 476
Target Start/End: Complemental strand, 14223906 - 14223511
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctactctgag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  14223906 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccgacacgtgtccgacatgggacacgcctaatctgag 14223807  T
Q  181 gagtttctgtgctttatagataataaatcatggataaattgagtgatagaatttaccttaactgaggaggattttcagggtaaacattgaagttagatct 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223806 gagtttctgtgctttatagataataaatcatggataaattgagtgatagaatttaccttaactgaggaggattttcagggtaaacattgaagttagatct 14223707  T
Q  281 tggaggaaaaacaagcaagtattcatttttgtctggtgagtgtgatggctgtctactatagccagcaggagctggagcattagaagaaggactgctcttg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||     
T  14223706 tggaggaaaaacaagcaagtattcatttttgtctggtgagtgtgatggctgtctactatagccagcaggaagtggagcattagaagaaggactgctctta 14223607  T
Q  381 ttcttttcttcatctgagtaattgaaaaatgttttggataactccatggcttgtttcatcaaatctaaagaaataccatggttcacaatttggaag 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223606 ttcttttcttcatctgagtaattgaaaaatgttttggataactccatggcttgtttcatcaaatctaaagaaataccatggttcacaatttggaag 14223511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 220 - 476
Target Start/End: Complemental strand, 14209864 - 14209608
Alignment:
Q  220 tgagtgatagaatttaccttaactgaggaggattttcagggtaaacattgaagttagatcttggaggaaaaacaagcaagtattcatttttgtctggtga 319  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14209864 tgagtgatagaatttaccttaacttaggaggattttgagggtaaacattgaagttagatcttggaggaaaaacaagcaagtattcatttttgtctggtga 14209765  T
Q  320 gtgtgatggctgtctactatagccagcaggagctggagcattagaagaaggactgctcttgttcttttcttcatctgagtaattgaaaaatgttttggat 419  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14209764 gtgtgatggctgtctactatagccagcaggaagtggagcattagaagaaggactgctcttgttcttttcttcatctgagtaattgaaaaatgttttggat 14209665  T
Q  420 aactccatggcttgtttcatcaaatctaaagaaataccatggttcacaatttggaag 476  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14209664 aactccatggcttgtttcatcaaatctaaagaaacaccatggttcacaatttggaag 14209608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 257 - 476
Target Start/End: Complemental strand, 14217602 - 14217383
Alignment:
Q  257 agggtaaacattgaagttagatcttggaggaaaaacaagcaagtattcatttttgtctggtgagtgtgatggctgtctactatagccagcaggagctgga 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  14217602 agggtaaacattgaagttagatcttggaggaaaaacaagcaagtattcatttttgtctggtgagtgtgatggctgtctactatagccagcaggaagtgga 14217503  T
Q  357 gcattagaagaaggactgctcttgttcttttcttcatctgagtaattgaaaaatgttttggataactccatggcttgtttcatcaaatctaaagaaatac 456  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14217502 gcattagaagaaggactgctcttattcttttcttcatctgagtaattgaaaaatgttttggataactccatggcttgtttcatcaaatctaaagaaacac 14217403  T
Q  457 catggttcacaatttggaag 476  Q
    ||||||||||||||||||||    
T  14217402 catggttcacaatttggaag 14217383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 27903638 - 27903717
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca 160  Q
    |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| || || ||| |||||| ||||    
T  27903638 gataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgaca 27903717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 15864839 - 15864925
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgccta 173  Q
    ||||||||||||| |||| |||||||||||||||| ||||| |||||||||||      ||||| |||||||||| |||| ||||||||||||    
T  15864839 gataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcg------gacaccgacacgtgtctgacacgggacacgccta 15864925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 25074795 - 25074899
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctga 179  Q
    |||||||||||||||||| || |||||| |||||| ||||| | || ||||||||||| |||||  || ||||||||||| |||||||| |||| || ||    
T  25074795 gataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatccga 25074894  T
Q  180 ggagt 184  Q
    |||||    
T  25074895 ggagt 25074899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 21211294 - 21211413
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctga 179  Q
    ||||||||||||||||||  | ||| || |||||| | ||  ||||||||||||||| |||||| ||| ||||||||||| |||||||| |||| || ||    
T  21211294 gataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacactcctaatccga 21211393  T
Q  180 ggagtttctgtgctttatag 199  Q
    ||||| | ||||||| ||||    
T  21211394 ggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 25652084 - 25652005
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca 160  Q
    |||||||||||||||||| ||||||||| |||||| | ||| |||| ||||| ||||  ||||| ||||||||| |||||    
T  25652084 gataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgttcgaca 25652005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 12704710 - 12704647
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacac 144  Q
    ||||||||||||| |||| || |||||| | |||| ||||| |||||||||||||||| |||||    
T  12704710 gataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacac 12704647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 14202563 - 14202528
Alignment:
Q  220 tgagtgatagaatttaccttaactgaggaggatttt 255  Q
    |||||||||||||||||||||||| |||||||||||    
T  14202563 tgagtgatagaatttaccttaacttaggaggatttt 14202528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 10955000 - 10955056
Alignment:
Q  128 gtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggagt 184  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||| || |||||||    
T  10955000 gtgtcggtgtcggacac-gacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 24205094 - 24205041
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 134  Q
    |||||||||||||||||| || |||||  |||||| | ||||||||||||||||    
T  24205094 gataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 24205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 25365468 - 25365521
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 134  Q
    |||||||||||||||| | || ||||||  ||||| ||||||||||||||||||    
T  25365468 gataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcgg 25365521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 34307831 - 34307770
Alignment:
Q  83 taataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacac 144  Q
    ||||||||||||||||  | ||| || |||||| | |||||||||||||||||||| |||||    
T  34307831 taataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgtcggtgtcggacac 34307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 52369781 - 52369838
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||||||||||||  | |||||| | |||| ||||| ||||||||||||||||    
T  52369781 gataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtc 52369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 11610578 - 11610630
Alignment:
Q  150 cgtgtccgacat-gggacacgcctactctgaggagtttctgtgctttatagat 201  Q
    |||||||||||| |||||||||||| |||||||||| || |||||| ||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagat 11610630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 43554528 - 43554619
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgccta 173  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||||||||||| ||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacacgggacacgccta 43554619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 39696049 - 39695989
Alignment:
Q  84 aataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacac 144  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtccgacac 39695989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 25863211 - 25863267
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||||||||||| ||||||||| |||||| | |||||||||||||| |||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtc 25863267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 7997219 - 7997166
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 134  Q
    |||||||||||||||||| ||||||||  |||||| | ||||||||||||||||    
T  7997219 gataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcgg 7997166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  83 taataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtc 132  Q
    |||||||||||||||| || |||||| |||||| ||||||||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 36577719 - 36577617
Alignment:
Q  91 tgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctactctgaggagtttctgt 190  Q
    |||||||| ||||||||||||| || | ||| ||||||||||||||| |||||| ||  ||| ||||||| |||| ||||||| ||  || ||| |||||    
T  36577719 tgagaaaatgatataatttagtataattatatgtgtcgtgtcggtgt-cgacaccgatgcgtatccgacacgggatacgcctaatccaagaagtgtctgt 36577621  T
Q  191 gctt 194  Q
    ||||    
T  36577620 gctt 36577617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 2577233 - 2577193
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcata 121  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  2577233 gataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 24343513 - 24343634
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctga 179  Q
    ||||||||||||||||||  | |||||| |||||| | ||| |||||||||||||||||||||| ||| |||||||||||  |||||||||||| |||||    
T  24343513 gataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattctga 24343612  T
Q  180 ggagtttctgtgctttatagat 201  Q
    ||||| || |||||| ||||||    
T  24343613 ggagtgtccgtgcttcatagat 24343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 3144705 - 3144584
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctactctgag 180  Q
    ||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||| |||||  || ||||||| ||| | ||||| |||| || |||    
T  3144705 gataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacgagacacacctaatccgag 3144606  T
Q  181 gagtttctgtgctttatagata 202  Q
     ||| || |||||| |||||||    
T  3144605 aagtgtccgtgcttcatagata 3144584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 20743331 - 20743274
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    |||||||||||||||||| || |||||| |||||| ||||| |||| |||||||||||    
T  20743331 gataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtc 20743274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 944717 - 944602
Alignment:
Q  85 ataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggag 183  Q
    ||||||||||| || ||   ||||||||||| | ||| |||||||||| |||||  |||| ||| |||||||||||  ||||||| |||| |||||||||    
T  944717 ataatttgagataatgacgcaatttagtgtaattataggtgtcgtgtcagtgtcgaacacagacgcgtgtccgacaccgggacacacctaatctgaggag 944618  T
Q  184 tttctgtgctttatag 199  Q
    | |||| |||| ||||    
T  944617 tctctgagcttcatag 944602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 31243600 - 31243545
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgt 137  Q
    ||||||||||||||||| || |||||| |||||| ||||| ||||| |||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgt 31243545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 6273953 - 6274007
Alignment:
Q  84 aataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||||||||| |||||||||||||||| | |||   ||||||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtc 6274007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 8820414 - 8820491
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccga 158  Q
    ||||||||||||| ||||  | |||||| | || | ||||| |||||||||||||||| ||| || ||||||||||||    
T  8820414 gataataatttgataaaatcacataattcaatggagtcatatgtgtcgtgtcggtgtctgacgctaacacgtgtccga 8820491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 23386166 - 23386215
Alignment:
Q  95 aaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacac 144  Q
    |||| |||||||||||||||| ||||| ||||| |||||||||| |||||    
T  23386166 aaaatgatataatttagtgtaatcataggtgtcatgtcggtgtcggacac 23386215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 49659573 - 49659536
Alignment:
Q  84 aataatttgagaaaacgatataatttagtgtattcata 121  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcata 49659536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 18513294 - 18513175
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtc-gtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctg 178  Q
    |||||||||||||||||| || |||||| | |||| ||||| ||||| ||||  ||||| ||||| |||  ||||||||||   ||||||||||| ||||    
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt-tgtgtcggacaccgacgtgtgtccgacaccaggacacgcctaatctg 18513196  T
Q  179 aggagtttctgtgctttatag 199  Q
    |||||| || |||||| ||||    
T  18513195 aggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 23292997 - 23292926
Alignment:
Q  128 gtgtcggtgtccgacactgacacgtgtccgacat-gggacacgcctactctgaggagtttctgtgctttatag 199  Q
    ||||||||||| ||||| |||||||||||||||  |||||||||||| || ||||||| || |||||| ||||    
T  23292997 gtgtcggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 4017847 - 4017755
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgccta 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||  ||||| |||| || |||||||||    
T  4017847 gataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtcggacaccgacgtgtgtctgacacggaacacgccta 4017755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 29812716 - 29812660
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 29812660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 7133327 - 7133228
Alignment:
Q  85 ataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggag 183  Q
    |||||||||||||| || |||||| |||||| ||||| |||  ||||||||||| ||||| ||| ||||||||||| |||||||| |||| |||||||||    
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggag 7133228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 23751906 - 23752020
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctactctgag 180  Q
    ||||||||||||| |||| |||||||||||||||| ||||| |||||||||||      ||||| ||| |||||| |||| |||||||||||| || ||     
T  23751906 gataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcg------gacaccgacgcgtgtcagacacgggacacgcctaatccgat 23751999  T
Q  181 gagtttctgtgctttatagat 201  Q
     ||| ||||||||| ||||||    
T  23752000 aagtgtctgtgcttcatagat 23752020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 5938478 - 5938595
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctga 179  Q
    ||||||||||||| ||||  | |||||| ||| || | ||| |||| ||||||||||| ||||| ||  |||||||||||  || |||| |||| |||||    
T  5938478 gataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaatctga 5938577  T
Q  180 ggagtttctgtgctttat 197  Q
    ||||||||| ||||||||    
T  5938578 ggagtttctctgctttat 5938595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 43249999 - 43250056
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    |||||||||||||||||| || |||||  |||||| | ||||||||||||||||||||    
T  43249999 gataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtc 43250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 23930225 - 23930304
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca 160  Q
    |||| ||||||||||||| || |||||| |||||| ||||| |||| ||||||||||| || || ||  |||||||||||    
T  23930225 gatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcggataccgatgcgtgtccgaca 23930304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 23128713 - 23128667
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcg 128  Q
    |||||||||||||||||| |||||||| |||||| ||||| ||||||    
T  23128713 ataataatttgagaaaaccatataattcagtgtaatcatatgtgtcg 23128667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 38804608 - 38804488
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgac-atgggacacgcctactctga 179  Q
    ||||||||||| |||||| || |||||  || ||| ||||| ||||||||| |||||| ||||| |||  |||||||||   |||||| ||||| || ||    
T  38804608 gataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggacaccgacgtgtgtccgacgccgggacatgcctaatccga 38804509  T
Q  180 ggagtttctgtgctttataga 200  Q
    ||||| | ||||||| |||||    
T  38804508 ggagtgtatgtgcttcataga 38804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 17168516 - 17168442
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtc 155  Q
    |||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcggacactgacacgtgtc 17168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 6389749 - 6389805
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgt 137  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  6389749 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 34446571 - 34446690
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctga 179  Q
    |||||||||||||||||| || |||||| |||||| ||||| ||||||||||||||||| |||| ||| ||| || |||| |||||||| |||| ||  |    
T  34446571 gataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatccaa 34446670  T
Q  180 ggagtttctgtgctttatag 199  Q
    ||||| || |||||| ||||    
T  34446671 ggagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 26247432 - 26247552
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctactctgag 180  Q
    ||||||||||| |||||| || ||| |||||| || ||||| || ||||||||||||| |||||  ||||||||| ||||  | |||| |||| ||||||    
T  26247432 gataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcggacaccaacacgtgtctgacaccgaacacacctaatctgag 26247531  T
Q  181 gagtttctgtgctttatagat 201  Q
    |||| || ||| || ||||||    
T  26247532 gagtgtccgtgtttcatagat 26247552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 19602234 - 19602176
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtcc 139  Q
    |||||||||||||||||| ||||||||| |||||| ||||| || | ||||||||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtcc 19602176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 8365524 - 8365448
Alignment:
Q  123 gtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggagtttctgtgctttatag 199  Q
    ||||||||||||| || ||||| ||||||||||||||| ||||||||||||| || ||||||| || |||||| ||||    
T  8365524 gtgtcgtgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 10339131 - 10339054
Alignment:
Q  122 agtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggagtttctgtgctttatag 199  Q
    |||| |||||||||||| ||||| ||||| ||||||||| ||||||||||||| || ||||||| || |||||| ||||    
T  10339131 agtgccgtgtcggtgtcggacac-gacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 13009546 - 13009490
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgt 137  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  13009546 gataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgt 13009490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 39820436 - 39820547
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctactctgagg 181  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||||||      ||||| ||| ||||||||||| |||||||||||| || |||     
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcg------gacaccgacgcgtgtccgacacgggacacgcctaatccgaga 39820529  T
Q  182 agtttctgtgctttatag 199  Q
    ||| || |||||| ||||    
T  39820530 agtgtccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 13845241 - 13845297
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||||| |||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtc 13845297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 26915285 - 26915202
Alignment:
Q  89 tttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcct 172  Q
    |||||||||| || |||||||| |||| ||| |||||||||||||||||| ||||| || ||||||| |||| ||||||||||||    
T  26915285 tttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac-gatacgtgtcagacattgggacacgcct 26915202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 35431193 - 35431140
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 134  Q
    |||||||||||||||||| || ||| ||||||||| ||||| ||||||||||||    
T  35431193 gataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 44067522 - 44067579
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    |||||||||||||||||| || |||||  |||||| | ||||||||||||||||||||    
T  44067522 gataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtc 44067579  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 40063958 - 40064020
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacac 144  Q
    ||||||||||||||||| || |||||| | |||| ||||| | ||||||||||||||| ||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtccaacac 40064020  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 1676718 - 1676771
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 134  Q
    |||||||||||| ||||| || ||| ||||||||| ||||| ||||||||||||    
T  1676718 gataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 1676771  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 23354705 - 23354648
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 23354648  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 25544488 - 25544544
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtc 25544544  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 24011042 - 24011121
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca 160  Q
    |||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||| || || ||  |||||||||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgaca 24011121  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 23355048 - 23354939
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc------cgacactgacacgtgtccgacatgggacacgcctac 174  Q
    |||||||||||||||||| |||||||||||||| | ||||| ||||| ||||||||||       ||||| ||| |||||| |||| ||||||||||||     
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcggggttggacaccgacccgtgtctgacacgggacacgcctaa 23354949  T
Q  175 tctgaggagt 184  Q
    || |||||||    
T  23354948 tccgaggagt 23354939  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 10535812 - 10535757
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtg 136  Q
    |||||||||||||||||| || |||||| |||||| ||||||||||||||| ||||    
T  10535812 gataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtg 10535757  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 35056922 - 35056998
Alignment:
Q  123 gtgtcgtgtcggtgtccgacactgacacgtgtccgacatgg-gacacgcctactctgaggagtttctgtgctttatag 199  Q
    |||||||||||||||| ||||| ||||||||||||||| ||  ||||||||| |||||||||| || |||||| ||||    
T  35056922 gtgtcgtgtcggtgtcggacac-gacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 38919212 - 38919336
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtc------gtgtcggtgtccgacactgacacgtgtccgacatgggacacgcctac 174  Q
    |||||||||||||||||| | |||| ||||||||| ||||| |||||      ||||||||||| || |||||  |||||||||||  ||||||| |||     
T  38919212 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgatgcgtgtccgacacaggacacgtctaa 38919311  T
Q  175 tctgaggagtttctgtgctttatag 199  Q
    ||||| |||| | ||||||| ||||    
T  38919312 tctgaagagtgtttgtgcttcatag 38919336  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 26769565 - 26769643
Alignment:
Q  123 gtgtcgtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggagtttctgtgctttatagat 201  Q
    ||||| ||||||| || ||||| ||||||||||||||| ||||||||||||| || ||||||| || |||||| ||||||    
T  26769565 gtgtcatgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 11308053 - 11308000
Alignment:
Q  85 ataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 138  Q
    ||||||||| |||| || |||||| |||||| ||||| ||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtc 11308000  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 42005000 - 42004921
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacactgacacgtgtccgaca 160  Q
    |||||||||||||||||| || ||||||||||||| ||||| |||| ||||||||||| ||||| ||| | |||||||||    
T  42005000 gataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgaca 42004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 1486760 - 1486649
Alignment:
Q  83 taataatttgagaaaacgatataatttagtgtattcataagtgtcg-tgtcggtgtccgacactgacacgtgtccgacat-gggacacgcctactctgag 180  Q
    ||||||||||| ||||  | |||||| |||||| | |||||||||| ||||| |||| ||||| |||||||||||||||  |||||||||||| || |||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgag 1486663  T
Q  181 gagtttctgtgctt 194  Q
    |||| |||||||||    
T  1486662 gagtgtctgtgctt 1486649  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 37598879 - 37598950
Alignment:
Q  128 gtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggagtttctgtgctttatag 199  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||||| || |||||| ||||    
T  37598879 gtgtcggtgtcggacac-gacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 11634177 - 11634127
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgt 131  Q
    ||||||||||||||||||| | |||||||| |||| ||||| |||||||||    
T  11634177 gataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgt 11634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 1815305 - 1815361
Alignment:
Q  128 gtgtcggtgtccgacactgacacgtgtccgacat-gggacacgcctactctgaggagt 184  Q
    ||||||||||||||||| ||||| |||||||||  |||||||||||| ||||||||||    
T  1815305 gtgtcggtgtccgacac-gacacatgtccgacaccgggacacgcctaatctgaggagt 1815361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 23440017 - 23440050
Alignment:
Q  82 ataataatttgagaaaacgatataatttagtgta 115  Q
    ||||||||||||||||| ||||||||||||||||    
T  23440017 ataataatttgagaaaatgatataatttagtgta 23440050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 47989551 - 47989627
Alignment:
Q  123 gtgtcgtgtcggtgtccgacactgacacgtgtccgacat-gggacacgcctactctgaggagtttctgtgctttatag 199  Q
    |||||||||||||||| ||||| ||||| |||| ||||| |||||||||||| || ||||||| || |||||| ||||    
T  47989551 gtgtcgtgtcggtgtcggacac-gacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 6573999 - 6574047
Alignment:
Q  85 ataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcg 133  Q
    ||||||||||| || |||||||||||||||| ||||| |||| ||||||    
T  6573999 ataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 56932 - 56974
Alignment:
Q  85 ataatttgagaaaacgatataatttagtgtattcataagtgtc 127  Q
    |||||||||||||| ||||||||| |||||| |||||||||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtc 56974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 1955 - 2008
Alignment:
Q  81 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 134  Q
    |||||||||||| ||||| || ||| ||||||||| ||||| ||||||||||||    
T  1955 gataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 2008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 5047 - 4976
Alignment:
Q  128 gtgtcggtgtccgacactgacacgtgtccgaca-tgggacacgcctactctgaggagtttctgtgctttatag 199  Q
    ||||||||||| ||||| ||||||||||||||| || |||| ||||| || ||||||| ||||||||| ||||    
T  5047 gtgtcggtgtcggacac-gacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatag 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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