View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14118_low_11 (Length: 418)
Name: NF14118_low_11
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 5678527 - 5678142
Alignment:
| Q |
18 |
actacaacatctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtatannnnnnn--atgtttatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5678527 |
actacaacatctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtatatttttttttatgtttatg |
5678428 |
T |
|
| Q |
116 |
tatatatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttgtattgctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5678427 |
tatatatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttgtattgctt |
5678328 |
T |
|
| Q |
216 |
aattataggattttttctcaggagattccaagtgatgtcaatgtccaaattggagaatcttcctttactttacataaggtagtggctctttgctgcatag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5678327 |
aattataggattttttctcaggagattccaagtgatgtcaatgtccaaattggtgaatcttcctttactttacataaggtagtgactctttgctgcatag |
5678228 |
T |
|
| Q |
316 |
atataatatatatcaaacttatttgctttgaatcattcaagtgaagagtaatgatttcttaatcttgtaagatgtcacttgtcaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5678227 |
atataatatatatcaaacttatttgctttgaatcattcaagtgaagagtaatgatttcttaatcttgtaagatgtcacttgtcaat |
5678142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University