View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_13 (Length: 416)
Name: NF14118_low_13
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 41280788 - 41280368
Alignment:
| Q |
1 |
ttaccttctcaatcaacacatttgatagctaagagaatttcattgggtcagattgtgttggtgtatgtgttggcttattctaatggtgctcatattgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280788 |
ttaccttctcaatcaacacatttgatagctaagagaatttcattgggtcagattgtgttggtgtatgtgttggcttattctaatggtgctcatattgatc |
41280689 |
T |
|
| Q |
101 |
ctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280688 |
ctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctacca |
41280589 |
T |
|
| Q |
201 |
ggtaattttatcattttctttcttgctatgtttagagacattaattacac--nnnnnnnatgctcatatgtccatgctatgaaattgtttatattatatt |
298 |
Q |
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| T |
41280588 |
ggtaattttatcattttctttcttgctatgtttagagacattaattacactttttttttatgctcatatgtccatgctatgaaattgtttatattatatt |
41280489 |
T |
|
| Q |
299 |
aatgtttgtattattcctctaaatacacacac-------------tactaaaatattagaataattgagacacctttgttactctcatgtcttttttgtt |
385 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41280488 |
aatgtttgtattattcctctaaatacacacacacacacactagtatactaaaatattaaaataattgagacacctttgttactctcgtgtcttttttgtt |
41280389 |
T |
|
| Q |
386 |
gttgttgttgtgacttctgtg |
406 |
Q |
| |
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| T |
41280388 |
gttgttgttgtgacttctgtg |
41280368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 38806444 - 38806483
Alignment:
| Q |
114 |
tattcatttggctgctagtactgctttaggtgtaattgct |
153 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
38806444 |
tattcatttggcagctagtactgctttatgtgtaattgct |
38806483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 34981887 - 34981782
Alignment:
| Q |
139 |
ttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagaga |
238 |
Q |
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||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
34981887 |
ttaggtgtaattgcttgtgtggttgcatt---tcttccttgccctccttttgcttgctaccaggtaattttatcattttctttcatgctatgtttcgaga |
34981791 |
T |
|
| Q |
239 |
cattaatta |
247 |
Q |
| |
|
||||||||| |
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|
| T |
34981790 |
cattaatta |
34981782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 34981612 - 34981660
Alignment:
| Q |
109 |
catcctattcatttggctgctagtactgctttaggtgtaattgcttgtg |
157 |
Q |
| |
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|||| |||||||||||| ||||||||| ||||| ||||||||||||||| |
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|
| T |
34981612 |
catcttattcatttggcagctagtactcctttatgtgtaattgcttgtg |
34981660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 54185219 - 54185258
Alignment:
| Q |
114 |
tattcatttggctgctagtactgctttaggtgtaattgct |
153 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
54185219 |
tattcatttggcagctagtactgctttatgtgtaattgct |
54185258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 46636669 - 46636708
Alignment:
| Q |
114 |
tattcatttggctgctagtactgctttaggtgtaattgct |
153 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
46636669 |
tattcatttggcagctagtactgctttatgtgtaattgct |
46636708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 153
Target Start/End: Complemental strand, 43514833 - 43514794
Alignment:
| Q |
114 |
tattcatttggctgctagtactgctttaggtgtaattgct |
153 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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| T |
43514833 |
tattcatttggcagctagtactgctttatgtgtaattgct |
43514794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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