View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_15 (Length: 388)
Name: NF14118_low_15
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 3951483 - 3951127
Alignment:
| Q |
19 |
aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
118 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951483 |
aggcaactctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
3951384 |
T |
|
| Q |
119 |
ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatg--- |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3951383 |
ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaa |
3951284 |
T |
|
| Q |
216 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcg |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951283 |
gaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcg |
3951184 |
T |
|
| Q |
316 |
aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtattta |
372 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951183 |
aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtattta |
3951127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 4027393 - 4027646
Alignment:
| Q |
19 |
aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
118 |
Q |
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|||||||||||||||| ||||||||||||||| ||| | || | | |||||| || |||||| || || || |||||||||||||||||||||| |||| |
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| T |
4027393 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaa |
4027490 |
T |
|
| Q |
119 |
ggaacaaaatga--gtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatgg |
216 |
Q |
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||| |||||||| |||| ||||||| |||||| | ||| | |||||| |||||||||| | ||||| ||||| ||||||||||||| | ||||| || |
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| T |
4027491 |
ggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacataa--gtgtgcaggacatagaatataagg |
4027587 |
T |
|
| Q |
217 |
aaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatataga |
275 |
Q |
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||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
4027588 |
aaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatataga |
4027646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
216 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
278 |
Q |
| |
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|||||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 4013094 - 4013193
Alignment:
| Q |
19 |
aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| | || | |||| ||| |||||||| ||||| | ||||||||||||||||| ||||||||| |
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| T |
4013094 |
aggcaattctaagtcattaaaactcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattc-tgactttaa |
4013192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 13400438 - 13400466
Alignment:
| Q |
344 |
aaatttgaaattgataagcagagtattta |
372 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13400438 |
aaatttgaaattgataagcagagtattta |
13400466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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