View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14118_low_17 (Length: 386)
Name: NF14118_low_17
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 53620625 - 53620986
Alignment:
| Q |
6 |
taaattattctaagattttttaaatattgagattgagatcaccagtgtactcccttaccaagtgaggtttctttttatcttccattttaataataggccg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53620625 |
taaattattctaagattttttaaatattgagattgagatcaccagtgtactctcttaccaagtgaggtttctttttatcttccattttaataataggcag |
53620724 |
T |
|
| Q |
106 |
gaaccaagggtccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatatactaactaattttgagcagcgctggaagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620725 |
gaaccaagggtccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatatactaactaattttgagcagcgctggaagaa |
53620824 |
T |
|
| Q |
206 |
agccaccagatggtctgagttgggtcaaaaattgaaaagagtatcttcttggcacgatgattctttgatcaagttagaacgcatctcttggattcttagt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620825 |
agccaccagatggtctgagttgggtcaaaaattgaaaagagtatcttcttggcacgatgattctttgatcaagttagaacgcatctcttggattcttagt |
53620924 |
T |
|
| Q |
306 |
ccttctgaatcaatgtcaaatgatgatcctgagttatgggtttcaaaggaagatgaccctca |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620925 |
ccttctgaatcaatgtcaaatgatgatcctgagttatgggtttcaaaggaagatgaccctca |
53620986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 36841127 - 36841068
Alignment:
| Q |
117 |
ccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatata |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
36841127 |
ccaaggcaaccatggcatgacttacattgcaaaattgaaggtccggctgcatatgatata |
36841068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University