View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_18 (Length: 383)
Name: NF14118_low_18
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 15517761 - 15518122
Alignment:
| Q |
1 |
tttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcaggaccaaat |
100 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| |
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| T |
15517761 |
tttaatttacaaatcagagaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagacccaccaccatcggggccaaat |
15517860 |
T |
|
| Q |
101 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcagaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15517861 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcaaaaca |
15517960 |
T |
|
| Q |
201 |
aaaatttaaccatcattgtttcagcaggtcaaataaccctaaatgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctacta |
300 |
Q |
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| T |
15517961 |
aaaatttaaccatcattatttcagcaggtgaaacaaccctaagtgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctacta |
15518060 |
T |
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| Q |
301 |
cgttataagaaggaagggaaagaatcaagggtatgtattatttaataatttatctctatcaa |
362 |
Q |
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| T |
15518061 |
cgttataagaaggaagggaaagaatcaagggtatgtattatttaataatttatctatatcaa |
15518122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 15522051 - 15522389
Alignment:
| Q |
1 |
tttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcaggaccaaat |
100 |
Q |
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| T |
15522051 |
tttaatttataaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaggaatcctagtgctctttcagatccaccaccatcaggaccaaat |
15522150 |
T |
|
| Q |
101 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcagaaca |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||| |
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| T |
15522151 |
tcaagttatcttgtgatattggatgaagtagctcaaacttactcttgttttggtttgtcaaaagacaatagaatcaagaattttcctttacctcagaaca |
15522250 |
T |
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| Q |
201 |
aaaatttaaccatcattgtttcagcaggtcaaataaccctaaatgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctacta |
300 |
Q |
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||||||||||||||| | | ||||||||| ||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15522251 |
aaaatttaaccatcaatttatcagcaggtgaaagcacctttttggaagaagctatgttcattccagtattgaatcaaccattgtcttctaatcgctacta |
15522350 |
T |
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| Q |
301 |
cgttataagaaggaagggaaagaatcaagggtatgtatt |
339 |
Q |
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| T |
15522351 |
tgttataagaagggaggggaaatatcaagggtatgtatt |
15522389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15528182 - 15528396
Alignment:
| Q |
1 |
tttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcaggaccaaat |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||| |
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| T |
15528182 |
tttaatctacaaatcagtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgctctttcagacccaccaccatcggggccaaat |
15528281 |
T |
|
| Q |
101 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcagaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||| |||||||||||| |
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| T |
15528282 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtccaaagacaatagaatcaagaattttcctctacctcagaaca |
15528381 |
T |
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| Q |
201 |
aaaatttaaccatca |
215 |
Q |
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||||| ||||||||| |
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| T |
15528382 |
aaaatgtaaccatca |
15528396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15545619 - 15545833
Alignment:
| Q |
1 |
tttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcaggaccaaat |
100 |
Q |
| |
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|||||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15545619 |
tttaatctacaaatcagagaaaatgtatgcaacaagacttctttccatgtacaaaatgaatcctagtgcactttcagacccaccaccatcaggaccaaat |
15545718 |
T |
|
| Q |
101 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcagaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||| |
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| T |
15545719 |
tcaagttatcttgtgatattggatgaagaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctcagaaca |
15545818 |
T |
|
| Q |
201 |
aaaatttaaccatca |
215 |
Q |
| |
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|| | ||||||||| |
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| T |
15545819 |
aagaggtaaccatca |
15545833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 15550365 - 15550563
Alignment:
| Q |
17 |
gtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcaggaccaaattcaagttatcttgtga |
116 |
Q |
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|||| |||||||||| ||||||||||||||||||| |||| ||| |||||||| |||||||||| |||||||||||| |||||||| |||||||||| | |
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| T |
15550365 |
gtgataatgtatgcagcaagacttctttccatgtataaaaggaaccctagtgctctttcagatcaaccaccatcaggtccaaattccggttatcttgtaa |
15550464 |
T |
|
| Q |
117 |
tattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcagaacaaaaatttaaccatca |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||| ||||||| | | || ||| ||||||| |||||||||||| |||||||||||| |
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| T |
15550465 |
tattggatgaagaagctcaaacttactctttctttggattgtggaaggatattggtataggaaatcttcctttccctcagaacaaacatttaaccatca |
15550563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 15528446 - 15528554
Alignment:
| Q |
244 |
tgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctactacgttataagaaggaagggaaagaatcaagggtatgta-ttatt |
342 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
15528446 |
tgaagaagctatgttcattccagtgttgaatcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtatttatt |
15528545 |
T |
|
| Q |
343 |
taataattt |
351 |
Q |
| |
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|||| |||| |
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| T |
15528546 |
taatcattt |
15528554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 15545886 - 15545981
Alignment:
| Q |
244 |
tgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctactacgttataagaaggaagggaaagaatcaagggtatgtatt |
339 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| |||| || |||||||||||||||| |
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| T |
15545886 |
tgaagaagccatgttcattccagtattgaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatt |
15545981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 15550606 - 15550682
Alignment:
| Q |
261 |
ttccagtattaaatcaaccattgtcttctaatcgctactacgttataagaaggaagggaaagaatcaagggtatgta |
337 |
Q |
| |
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|||| ||||| ||||||||||||||||| || || || || || ||| |||||||||| |||||||||||||||||| |
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| T |
15550606 |
ttccggtattgaatcaaccattgtcttcgaaccgttattatgtcatacgaaggaaggggaagaatcaagggtatgta |
15550682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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