View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_low_20 (Length: 357)

Name: NF14118_low_20
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_low_20
NF14118_low_20
[»] chr3 (11 HSPs)
chr3 (16-340)||(37717358-37717681)
chr3 (150-329)||(13354-13531)
chr3 (150-266)||(37252198-37252313)
chr3 (36-137)||(13453-13554)
chr3 (40-149)||(13556-13665)
chr3 (150-227)||(37252083-37252160)
chr3 (36-137)||(37252175-37252275)
chr3 (60-149)||(37252084-37252173)
chr3 (150-227)||(13569-13646)
chr3 (273-338)||(37267608-37267675)
chr3 (17-54)||(37249898-37249936)
[»] chr7 (24 HSPs)
chr7 (150-341)||(47943729-47943918)
chr7 (150-341)||(47949159-47949348)
chr7 (150-341)||(42026294-42026486)
chr7 (164-341)||(15336854-15337025)
chr7 (16-149)||(47943943-47944077)
chr7 (16-149)||(47949373-47949507)
chr7 (36-137)||(42026408-42026509)
chr7 (16-149)||(27030133-27030267)
chr7 (16-149)||(42026511-42026645)
chr7 (36-137)||(47943840-47943941)
chr7 (36-137)||(47949270-47949371)
chr7 (150-227)||(42026524-42026601)
chr7 (150-221)||(47943962-47944033)
chr7 (150-221)||(47949392-47949463)
chr7 (150-227)||(27030146-27030223)
chr7 (16-69)||(27030282-27030336)
chr7 (8-65)||(15337076-15337134)
chr7 (16-69)||(42026660-42026714)
chr7 (16-69)||(47944092-47944146)
chr7 (16-69)||(47949522-47949576)
chr7 (164-224)||(11827250-11827310)
chr7 (73-145)||(15336953-15337025)
chr7 (36-69)||(27030098-27030131)
chr7 (73-133)||(11827250-11827310)
[»] chr4 (10 HSPs)
chr4 (150-329)||(48093716-48093893)
chr4 (150-329)||(2333236-2333415)
chr4 (16-149)||(2333440-2333574)
chr4 (16-149)||(48094033-48094167)
chr4 (36-149)||(48093918-48094031)
chr4 (150-227)||(2333453-2333530)
chr4 (36-137)||(48093815-48093916)
chr4 (36-137)||(2333337-2333438)
chr4 (150-227)||(48094046-48094123)
chr4 (150-227)||(48093931-48094008)
[»] chr8 (9 HSPs)
chr8 (150-338)||(33074243-33074431)
chr8 (150-336)||(8036675-8036860)
chr8 (16-149)||(33074084-33074218)
chr8 (17-137)||(8036632-8036753)
chr8 (36-137)||(33074220-33074321)
chr8 (153-227)||(33074131-33074205)
chr8 (16-69)||(33074015-33074069)
chr8 (16-68)||(8036562-8036615)
chr8 (313-342)||(8036844-8036873)
[»] chr2 (6 HSPs)
chr2 (150-268)||(44073815-44073933)
chr2 (16-137)||(44073855-44073977)
chr2 (16-69)||(44073992-44074046)
chr2 (273-342)||(44073376-44073444)
chr2 (164-224)||(1783707-1783767)
chr2 (73-133)||(1783707-1783767)
[»] scaffold0039 (2 HSPs)
scaffold0039 (164-329)||(107211-107371)
scaffold0039 (18-58)||(107431-107472)
[»] chr6 (3 HSPs)
chr6 (239-341)||(7821833-7821932)
chr6 (36-97)||(7821725-7821786)
chr6 (150-191)||(7821748-7821789)
[»] chr1 (4 HSPs)
chr1 (164-263)||(16082366-16082461)
chr1 (73-141)||(16082366-16082434)
chr1 (283-341)||(16082469-16082527)
chr1 (19-68)||(16082266-16082316)
[»] chr5 (1 HSPs)
chr5 (164-224)||(18921826-18921886)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 37717358 - 37717681
Alignment:
Q  16 attaaaaataacatcttcgtgtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagga 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||| ||||||| |||||||| ||| ||||    
T  37717358 attaaaaataacatcttcgtgtacatttatttcttaataggtggagtcatctttatttctagaacttctggatactcttctccaagatactcatacagga 37717457  T
Q  116 caacactaagatgacccaaaaatgttcctctcgtgagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaa 215  Q
    |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37717458 caacaccaaaatgacccaaaattgttcctctcgtgagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaa 37717557  T
Q  216 gatgacccaaaaaatattgttcttcacctttgcactcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaa 315  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||    
T  37717558 gatgacccaaaaaatattgttcctcacctttgcactcttgttgtttaataatacatttaactaccccttggattaaaacaaagaagaa-aaaaacacaaa 37717656  T
Q  316 ccataaaccctaaaccctaaatcct 340  Q
    |||||||||||||||||||||||||    
T  37717657 ccataaaccctaaaccctaaatcct 37717681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 150 - 329
Target Start/End: Complemental strand, 13531 - 13354
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    |||||||||||||||||||||||| || |||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  13531 gagtcatctttattcctagaacttctggatactcttctccaagatactcgtacaggacaacaccaagatgacccaaaaaatattgttcctcacctttgca 13432  T
Q  250 ctcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaa 329  Q
    ||||||||||||||| ||| || |||||||| ||||| ||||||||||||  || |||||||||||||||||||||||||    
T  13431 ctcttgttgtttaatgatacatttaactaccgcttgggttaaaacaaaga--aaaaaaaacacaaaccataaaccctaaa 13354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 37252198 - 37252313
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37252198 gagtcatctttattcctagaacttttgaatactcgtctc-aagatactcatacaagacaacaccaagatgacccaaaaaatattgttcctcacctttgca 37252296  T
Q  250 ctcttgttgtttaataa 266  Q
    |||||||||||||||||    
T  37252297 ctcttgttgtttaataa 37252313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 13554 - 13453
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||  || |||||||||| |||||||||||||    
T  13554 gtacatttattccttaataggtggagtcatctttattcctagaacttctggatactcttctccaagatactcgtacaggacaacaccaagatgacccaaa 13455  T
Q  136 aa 137  Q
    ||    
T  13454 aa 13453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 13665 - 13556
Alignment:
Q  40 atttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaaaatg 139  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||  |||||||  || |||||||||| ||||||| |||||| ||    
T  13665 atttattccttaataggtggagtcatctttattcctagaacttctggatactcttctccgagatactcgtacaggacaacaccaagatgatccaaaactg 13566  T
Q  140 ttcctctcgt 149  Q
    ||||||||||    
T  13565 ttcctctcgt 13556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 37252083 - 37252160
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    ||||||||||||||| |||||||| || |||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  37252083 gagtcatctttattcttagaacttctggatactcttctccaagatattcatacaggacaacaccaagatgacccaaaa 37252160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 37252175 - 37252275
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| | |||||||| |||||||||||||    
T  37252175 gtacatttattccttaataggtggagtcatctttattcctagaacttttgaatactcgtctc-aagatactcatacaagacaacaccaagatgacccaaa 37252273  T
Q  136 aa 137  Q
    ||    
T  37252274 aa 37252275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 37252084 - 37252173
Alignment:
Q  60 agtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaaaatgttcctctcgt 149  Q
    |||||||||||||| ||||||||| ||||| ||||||| |||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  37252084 agtcatctttattcttagaacttctggatactcttctccaagatattcatacaggacaacaccaagatgacccaaaattgttcctatcgt 37252173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 13646 - 13569
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    |||||||||||||||||||||||| || |||||| ||||| ||||| || |||| |||||||||||||||| ||||||    
T  13646 gagtcatctttattcctagaacttctggatactcttctccgagatactcgtacaggacaacaccaagatgatccaaaa 13569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 37267608 - 37267675
Alignment:
Q  273 taactaccccttggattaaaacaaagaagaagaa--aaacacaaaccataaaccctaaaccctaaatc 338  Q
    |||||||| ||||| |||||||| | ||||| ||  |||||||||||||||||| |||||||||||||    
T  37267608 taactaccgcttgggttaaaacagaaaagaaaaagaaaacacaaaccataaaccataaaccctaaatc 37267675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 37249898 - 37249936
Alignment:
Q  17 ttaaaaataacatcttcgt-gtacatttattccttaata 54  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37249898 ttaaaaataacatcttcgtcgtacatttattccttaata 37249936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 150 - 341
Target Start/End: Complemental strand, 47943918 - 47943729
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47943918 gagtcatctttattcctagaacttttgaatactcttctccaagatactcatacaagacaacaccaagatgacccaaaaaatattgttcctcacctttgca 47943819  T
Q  250 ctcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaatcctg 341  Q
    ||||||||||||||||||| || |||||||| ||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  47943818 ctcttgttgtttaataatacatttaactaccacttgggttaaaacaaaga--aaaaaaaacacaaaccataaaccctaaaccctaaatcctg 47943729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 150 - 341
Target Start/End: Complemental strand, 47949348 - 47949159
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47949348 gagtcatctttattcctagaacttttgaatactcttctccaagatactcatacaagacaacaccaagatgacccaaaaaatattgttcctcacctttgca 47949249  T
Q  250 ctcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaatcctg 341  Q
    ||||||||||||||||||| || |||||||| ||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  47949248 ctcttgttgtttaataatacatttaactaccacttgggttaaaacaaaga--aaaaaaaacacaaaccataaaccctaaaccctaaatcctg 47949159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 150 - 341
Target Start/End: Complemental strand, 42026486 - 42026294
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  42026486 gagtcatctttattcctagaacttcgggatactcttctccaagatactcatacaagacaacaccaagatgacccaaaaaatgttgttcctcacctttgca 42026387  T
Q  250 ctcttgttgtttaataataaatctaactaccccttggattaaaacaaaga-agaagaaaaacacaaaccataaaccctaaaccctaaatcctg 341  Q
    ||||||||||||||||||| || |||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  42026386 ctcttgttgtttaataatacatttaactaccgcttgggttaaaacaaagagagaaaaaaaacacaaaccataaaccctaaaccctaaatcctg 42026294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 15337025 - 15336854
Alignment:
Q  164 cctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgcactcttgttgtttaa 263  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||||||||||    
T  15337025 cctagaacttttgtatactcttctccaagatactcatacaagacaacaccaagatgacccaaa----attgttcctcacctttgcactcttgttgtttaa 15336930  T
Q  264 taataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaatcctg 341  Q
    ||||| || |||||||| ||||| ||||||||||||  ||  ||| ||||||||||||||| ||||||||||||||||    
T  15336929 taatacatttaactaccgcttgggttaaaacaaaga--aaacaaaccacaaaccataaaccataaaccctaaatcctg 15336854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 47944077 - 47943943
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| ||||||| |||||||| ||| | |    
T  47944077 attaaaaataacatcttcgtcgtacatttattccttaataggtggagtcatctttattcctagaacttatggatattcttctccaagatactcatacaag 47943978  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| ||||||||  |||| ||||||||||||    
T  47943977 acaacacaaagatgacgaaaaattgttcctctcgt 47943943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 47949507 - 47949373
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| ||||||| |||||||| ||| | |    
T  47949507 attaaaaataacatcttcgtcgtacatttattccttaataggtggagtcatctttattcctagaacttatggatattcttctccaagatactcatacaag 47949408  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| ||||||||  |||| ||||||||||||    
T  47949407 acaacacaaagatgacgaaaaattgttcctctcgt 47949373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 42026509 - 42026408
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||| | |||||||| |||||||||||||    
T  42026509 gtacatttattccttaataggtggagtcatctttattcctagaacttcgggatactcttctccaagatactcatacaagacaacaccaagatgacccaaa 42026410  T
Q  136 aa 137  Q
    ||    
T  42026409 aa 42026408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 27030267 - 27030133
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    ||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||| || |||  |||| | ||||| |||||||| ||| | |    
T  27030267 attaaaaataatatcttcatcgtacatttattccttaataggtggagtcatctttattcctataatttctagatacttttctccaagatactcatacaag 27030168  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| |||||||||||||| ||||||||||||    
T  27030167 acaacaccaagatgacccaaaattgttcctctcgt 27030133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 42026645 - 42026511
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    |||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||| |||||   |||| | ||||| |||||||| ||| | |    
T  42026645 attaaaaataacatcttcatcgtacatttattccttaatagatggagtcatctttattcctaaaacttttagatacttttctccaagatactcatacaag 42026546  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| ||||||| |||||| ||||||||||||    
T  42026545 acaacaccaagatgatccaaaattgttcctctcgt 42026511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 47943941 - 47943840
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||| | |||||||| |||||||||||||    
T  47943941 gtacatttattccttaataggtggagtcatctttattcctagaacttttgaatactcttctccaagatactcatacaagacaacaccaagatgacccaaa 47943842  T
Q  136 aa 137  Q
    ||    
T  47943841 aa 47943840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 47949371 - 47949270
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||| | |||||||| |||||||||||||    
T  47949371 gtacatttattccttaataggtggagtcatctttattcctagaacttttgaatactcttctccaagatactcatacaagacaacaccaagatgacccaaa 47949272  T
Q  136 aa 137  Q
    ||    
T  47949271 aa 47949270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 42026601 - 42026524
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    |||||||||||||||||| |||||||  |||||  ||||||||||| |||||||||||||||||||||||| ||||||    
T  42026601 gagtcatctttattcctaaaacttttagatacttttctccaagatactcatacaagacaacaccaagatgatccaaaa 42026524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 47944033 - 47943962
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgac 221  Q
    |||||||||||||||||||||||| || ||| || ||||||||||| |||||||||||||||| ||||||||    
T  47944033 gagtcatctttattcctagaacttatggatattcttctccaagatactcatacaagacaacacaaagatgac 47943962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 47949463 - 47949392
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgac 221  Q
    |||||||||||||||||||||||| || ||| || ||||||||||| |||||||||||||||| ||||||||    
T  47949463 gagtcatctttattcctagaacttatggatattcttctccaagatactcatacaagacaacacaaagatgac 47949392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 27030223 - 27030146
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    |||||||||||||||||| || || |  |||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  27030223 gagtcatctttattcctataatttctagatacttttctccaagatactcatacaagacaacaccaagatgacccaaaa 27030146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 27030336 - 27030282
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatcttt 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  27030336 attaaaaataacatcttcgtcgtacatttattccttaataggtggagtcatcttt 27030282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 15337134 - 15337076
Alignment:
Q  8 ccaagaatattaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcat 65  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  15337134 ccaataatattaaaaatgacatcttcgtcgtacatttattccttaataggtggagtcat 15337076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 42026714 - 42026660
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatcttt 69  Q
    |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  42026714 attaaaaataacatcttcttcgtacatttattccttaataggtggagtcatcttt 42026660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 47944146 - 47944092
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatcttt 69  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  47944146 attaaaaataacatcttcgtcgtacatttattcgttaataggtggagtcatcttt 47944092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 47949576 - 47949522
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatcttt 69  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  47949576 attaaaaataacatcttcgtcgtacatttattcgttaataggtggagtcatcttt 47949522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 11827250 - 11827310
Alignment:
Q  164 cctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgaccca 224  Q
    ||||||||||  | ||| || ||||||||||| ||| ||||||||||||||||||||||||    
T  11827250 cctagaacttccggatattcttctccaagatactcaaacaagacaacaccaagatgaccca 11827310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 15337025 - 15336953
Alignment:
Q  73 cctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaaaatgttcctc 145  Q
    ||||||||||  | ||| ||||||| |||||||| ||| | |||||||| |||||||||||||| ||||||||    
T  15337025 cctagaacttttgtatactcttctccaagatactcatacaagacaacaccaagatgacccaaaattgttcctc 15336953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 27030131 - 27030098
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatcttt 69  Q
    ||||||||||||||||||||||| ||||||||||    
T  27030131 gtacatttattccttaataggtggagtcatcttt 27030098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 11827250 - 11827310
Alignment:
Q  73 cctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgaccca 133  Q
    ||||||||||| ||||| ||||||| |||||||| | | | |||||||| |||||||||||    
T  11827250 cctagaacttccggatattcttctccaagatactcaaacaagacaacaccaagatgaccca 11827310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 150 - 329
Target Start/End: Complemental strand, 48093893 - 48093716
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48093893 gagtcatctttattcctagaacttttgaatactcgtctccaagatactcatacaagacaacaccaagatgacccaaaaaatattgttcctcacctttgca 48093794  T
Q  250 ctcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaa 329  Q
    ||||||||||||||||||| || |||| ||| ||||| ||||||||||||  || |||||||||||||||||||||||||    
T  48093793 ctcttgttgtttaataatacatttaaccacctcttgggttaaaacaaaga--aaaaaaaacacaaaccataaaccctaaa 48093716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 150 - 329
Target Start/End: Complemental strand, 2333415 - 2333236
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaa---aaaatattgttcttcaccttt 246  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||   |||||||||||| ||||||||    
T  2333415 gagtcatctttattcctaaaacttttgaatactcttctccaagatactcatacaagacaacaccaatatgacccaaaaaaaaatattgttcctcaccttt 2333316  T
Q  247 gcactcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaa 329  Q
    |||||||||||||||||||||| || |||||||| ||||| ||||||||   ||||| |||||||||||||||||||||||||    
T  2333315 gcactcttgttgtttaataatacatttaactaccgcttgggttaaaaca---aagaaaaaaaacacaaaccataaaccctaaa 2333236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 2333574 - 2333440
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||| ||| | |    
T  2333574 attaaaaataatatcttcgtcgtacatttattccttaataggtggagtcatctttattcctagaacttctggatactcttctccaagatactcatacaag 2333475  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| |||||||||||||| ||||| ||||||    
T  2333474 acaacaccaagatgacccaaaattgttcatctcgt 2333440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 48094167 - 48094033
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||  ||||| ||||||| |||||||| ||| |||    
T  48094167 attaaaaataacatattcgtcgtacatttattccttaataggtggagtcatctttattcctagaacttatggatactcttctccaagatactcatacagg 48094068  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| ||||||| |||||| ||||||||||||    
T  48094067 acaacaccaagatgaaccaaaattgttcctctcgt 48094033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 48094031 - 48093918
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||| ||||||||||| |||||| |||||||||| |||||  ||||| ||||||| |||||||| ||| |||||||||| |||||||||||||    
T  48094031 gtacatttatttcttaataggtggagtcatttttattcctataacttatggatactcttctccaagatactcatacaggacaacaccaagatgacccaaa 48093932  T
Q  136 aatgttcctctcgt 149  Q
    | ||||||||||||    
T  48093931 attgttcctctcgt 48093918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 2333530 - 2333453
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    |||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  2333530 gagtcatctttattcctagaacttctggatactcttctccaagatactcatacaagacaacaccaagatgacccaaaa 2333453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 48093916 - 48093815
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| | |||||||| |||||||||||||    
T  48093916 gtacatttattccttaataggtggagtcatctttattcctagaacttttgaatactcgtctccaagatactcatacaagacaacaccaagatgacccaaa 48093817  T
Q  136 aa 137  Q
    ||    
T  48093816 aa 48093815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 2333438 - 2333337
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||  | ||| ||||||| |||||||| ||| | |||||||| || ||||||||||    
T  2333438 gtacatttattccttaataggtggagtcatctttattcctaaaacttttgaatactcttctccaagatactcatacaagacaacaccaatatgacccaaa 2333339  T
Q  136 aa 137  Q
    ||    
T  2333338 aa 2333337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 48094123 - 48094046
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    |||||||||||||||||||||||| || |||||| ||||||||||| ||||||| |||||||||||||||| ||||||    
T  48094123 gagtcatctttattcctagaacttatggatactcttctccaagatactcatacaggacaacaccaagatgaaccaaaa 48094046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 48094008 - 48093931
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    ||||||| |||||||||| ||||| || |||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  48094008 gagtcatttttattcctataacttatggatactcttctccaagatactcatacaggacaacaccaagatgacccaaaa 48093931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 150 - 338
Target Start/End: Original strand, 33074243 - 33074431
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgaccc-aaaaaatattgttcttcacctttgc 248  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  33074243 gagtcatctttattcctagaatttttgaatactcgtctccaagatactcatacaagacaacaccaagatgacccaaaaaaatattgttcctcgcctttgc 33074342  T
Q  249 actcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaatc 338  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||    
T  33074343 actcttgttgtttaataatacatttaactaccgcttgggttaaaacaaagaa-aaaaaaaacacaaaccataaaccctaaaccataaatc 33074431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 150 - 336
Target Start/End: Original strand, 8036675 - 8036860
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  8036675 gagtcatctttattcatagaacttttgaatactcgtctccaagatactcatacaagacaacaccaagatgacccaaaaaatattgttcctcgcctttgca 8036774  T
Q  250 ctcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaa 336  Q
    ||||| ||||||||||||| || |||||||| ||||| ||||||||||| | || |||||||||||||||||||| |||||||||||    
T  8036775 ctcttattgtttaataatacatttaactaccgcttgggttaaaacaaagga-aaaaaaaacacaaaccataaaccataaaccctaaa 8036860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 33074084 - 33074218
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    |||||||||||||||||||| |||||||||||| |||||||||  | |||||||||||||||||||||| ||||| ||||||| || ||||| ||| ||     
T  33074084 attaaaaataacatcttcgtcgtacatttattcattaataggtagactcatctttattcctagaacttctggatactcttctccaacatactcatacaga 33074183  T
Q  115 acaacactaagatgacccaaaaatgttcctctcgt 149  Q
    ||||||| |||||||||||||| ||||||||||||    
T  33074184 acaacaccaagatgacccaaaattgttcctctcgt 33074218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 8036632 - 8036753
Alignment:
Q  17 ttaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagga 115  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||  | ||| || |||| |||||||| ||| | ||    
T  8036632 ttaaaaataacatctttgtcgtacatttattccttaataggtggagtcatctttattcatagaacttttgaatactcgtctccaagatactcatacaaga 8036731  T
Q  116 caacactaagatgacccaaaaa 137  Q
    |||||| |||||||||||||||    
T  8036732 caacaccaagatgacccaaaaa 8036753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 33074220 - 33074321
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||  | ||| || |||| |||||||| ||| | |||||||| |||||||||||||    
T  33074220 gtacatttattccttaataggtggagtcatctttattcctagaatttttgaatactcgtctccaagatactcatacaagacaacaccaagatgacccaaa 33074319  T
Q  136 aa 137  Q
    ||    
T  33074320 aa 33074321  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 33074131 - 33074205
Alignment:
Q  153 tcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaa 227  Q
    ||||||||||||||||||||| || |||||| ||||||| ||| |||||||  ||||||||||||||||||||||    
T  33074131 tcatctttattcctagaacttctggatactcttctccaacatactcatacagaacaacaccaagatgacccaaaa 33074205  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 33074015 - 33074069
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatcttt 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  33074015 attaaaaataacatcttcgtcgtacatttattccttaataggtggagtcatcttt 33074069  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8036562 - 8036615
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctt 68  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  8036562 attaaaaataacatcttcgtcgtacatttattccttaataggtggagtcatctt 8036615  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Original strand, 8036844 - 8036873
Alignment:
Q  313 aaaccataaaccctaaaccctaaatcctga 342  Q
    ||||||||||||||||||||||||||||||    
T  8036844 aaaccataaaccctaaaccctaaatcctga 8036873  T

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Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 150 - 268
Target Start/End: Complemental strand, 44073933 - 44073815
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44073933 gagtcatctttattcctagaacttttgaatactcgtctccaagatactcatacaagacaacaccaagatgacccaaaaaatattgttcctcacctttgca 44073834  T
Q  250 ctcttgttgtttaataata 268  Q
    |||||||||||||||||||    
T  44073833 ctcttgttgtttaataata 44073815  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 44073977 - 44073855
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctctaagatacttatatagg 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  | ||| || |||| |||||||| ||| | |    
T  44073977 attaaaaataacatcttcgtcgtacatttattccttaataggtggagtcatctttattcctagaacttttgaatactcgtctccaagatactcatacaag 44073878  T
Q  115 acaacactaagatgacccaaaaa 137  Q
    ||||||| |||||||||||||||    
T  44073877 acaacaccaagatgacccaaaaa 44073855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 44074046 - 44073992
Alignment:
Q  16 attaaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatcttt 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  44074046 attaaaaataacatcttcgtcgtacatttattccttaataggtgaagtcatcttt 44073992  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 44073444 - 44073376
Alignment:
Q  273 taactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaatcctga 342  Q
    ||||||||  |||| ||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||    
T  44073444 taactaccgtttgggttaaaacaaagaaaaa-aaaaacacaaatcattaaccctaaaccctaaatcctga 44073376  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 1783767 - 1783707
Alignment:
Q  164 cctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgaccca 224  Q
    |||||||||| || |||||| ||||| ||||| || |||| ||||||||||||||||||||    
T  1783767 cctagaacttctggatactcttctccgagatactcgtacaggacaacaccaagatgaccca 1783707  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 1783767 - 1783707
Alignment:
Q  73 cctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgaccca 133  Q
    ||||||||||| ||||| |||||||  |||||||  || |||||||||| |||||||||||    
T  1783767 cctagaacttctggatactcttctccgagatactcgtacaggacaacaccaagatgaccca 1783707  T

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Target: scaffold0039 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 164 - 329
Target Start/End: Complemental strand, 107371 - 107211
Alignment:
Q  164 cctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgcactcttgttgtttaa 263  Q
    ||||||| || || || ||| ||||||||||| ||||||||||||||||||||||||||||||     |||||| || |||||||||||||| |||||||    
T  107371 cctagaatttatggatgctcttctccaagatactcatacaagacaacaccaagatgacccaaa-----ttgttcctctcctttgcactcttgctgtttaa 107277  T
Q  264 taataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaa 329  Q
    ||||| || |||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  107276 taatacatttaactaccgcttgggttaaaacaaagaagaaaaaaaccacaaaccataaaccctaaa 107211  T

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Target: scaffold0039; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 107472 - 107431
Alignment:
Q  18 taaaaataacatcttcgt-gtacatttattccttaataggtg 58  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  107472 taaaaataacatcttcgtcgtacatttattccttaataggtg 107431  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 7821833 - 7821932
Alignment:
Q  239 tcacctttgcactcttgttgtttaataataaatctaactaccccttggattaaaacaaagaagaagaaaaacacaaaccataaaccctaaaccctaaatc 338  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  7821833 tcacctttgcactcttgttgtttaataatacatttaactaccgcttgggttaaaacaaag--gaa-aaaaacacaaaccataaaccctaaaccctaaatc 7821929  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7821725 - 7821786
Alignment:
Q  36 gtacatttattccttaataggtgtagtcatctttattcctagaacttcgggataatcttctc 97  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  7821725 gtacatttatttcttaataggtggagtcatctttattcctagaacttctggatactcttctc 7821786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 7821748 - 7821789
Alignment:
Q  150 gagtcatctttattcctagaacttttgaatactcgtctccaa 191  Q
    |||||||||||||||||||||||| || |||||| |||||||    
T  7821748 gagtcatctttattcctagaacttctggatactcttctccaa 7821789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 16082366 - 16082461
Alignment:
Q  164 cctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgacccaaaaaatattgttcttcacctttgcactcttgttgtttaa 263  Q
    |||||||||| || |||||| ||||||||||| |||||||||||||||| |||||| ||||||    ||||||  |||||||||||||||||||||||||    
T  16082366 cctagaacttctggatactcttctccaagatactcatacaagacaacactaagatggcccaaa----attgttgctcacctttgcactcttgttgtttaa 16082461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 16082366 - 16082434
Alignment:
Q  73 cctagaacttcgggataatcttctctaagatacttatataggacaacactaagatgacccaaaaatgtt 141  Q
    ||||||||||| ||||| ||||||| |||||||| ||| | ||||||||||||||| ||||||| ||||    
T  16082366 cctagaacttctggatactcttctccaagatactcatacaagacaacactaagatggcccaaaattgtt 16082434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 16082469 - 16082527
Alignment:
Q  283 ttggattaaaacaaaga-agaagaaaaacacaaaccataaaccctaaaccctaaatcctg 341  Q
    |||| |||||||||||| |||| |||| |||||| |||||||||||||||||||||||||    
T  16082469 ttgggttaaaacaaagagagaa-aaaaccacaaaacataaaccctaaaccctaaatcctg 16082527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16082266 - 16082316
Alignment:
Q  19 aaaaataacatcttcgt-gtacatttattccttaataggtgtagtcatctt 68  Q
    ||||| ||||||||||| | ||||||||||||||||||||| |||||||||    
T  16082266 aaaaaaaacatcttcgtcggacatttattccttaataggtggagtcatctt 16082316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 18921826 - 18921886
Alignment:
Q  164 cctagaacttttgaatactcgtctccaagataatcatacaagacaacaccaagatgaccca 224  Q
    ||||||||||  | |||||| ||||||||||| ||||||||||||||| ||||| ||||||    
T  18921826 cctagaacttccggatactcttctccaagatactcatacaagacaacatcaagaagaccca 18921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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