View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_24 (Length: 332)
Name: NF14118_low_24
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 30428508 - 30428826
Alignment:
| Q |
3 |
caaagggaaaccgctcaaccataatgtttattagaacattctccaacctctaaataa-tcttccaaaaaaccactctaacaaaatatatccacttttcaa |
101 |
Q |
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|||| |||||| |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30428508 |
caaaaggaaacggctcaaccataatgtttactagaacattctccaacctctaaaaaaatcttccaaaaaaccactctaacaaaatatatcaacttttcaa |
30428607 |
T |
|
| Q |
102 |
acnnnnnnnntattccctttttcgatctaaaaaaggaattcaaggaaaaacggtcttctagatttgtaggagttgcgagatatttcaactttgagaaatt |
201 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30428608 |
acaaaaagaatattccctttttcaatctaaaaaaggaattcaaggaaaaacggtcttctagatttgtaggagttgcgagatatttcgactttgagaaatt |
30428707 |
T |
|
| Q |
202 |
agaaaaagataatatcatcttgaaagaatctttgacgctctaggttgaacaaag---ttgaaaatttgtgaaagacactgcccaaaagtcgtccaaattt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
30428708 |
agaaaaagataatatcatcttgaaagaatctttgacgctctaggttgaacaaagttcttgaatttttttgaaagacactgcccaaaagtcgtccaaattt |
30428807 |
T |
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| Q |
299 |
tctattttatggtagaatt |
317 |
Q |
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||||||||||||||||||| |
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| T |
30428808 |
tctattttatggtagaatt |
30428826 |
T |
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