View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_low_28 (Length: 298)

Name: NF14118_low_28
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_low_28
NF14118_low_28
[»] chr8 (1 HSPs)
chr8 (4-298)||(43344021-43344315)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 43344021 - 43344315
Alignment:
Q  4 gaagcagcacagatgaaacttataaagataatgataagtatccaactgagactagagttgaagcattctctcctccttatttggacgaggctttttataa 103  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43344021 gaagcaacacacatgaaacttataaagataatgataagtatccaactgagactagagttgaagcattctctcctccttatttggacgaggcttttaataa 43344120  T
Q  104 gtataggccacaaattaatcaagatgcaactaaaaaagagttaaagtatggaaatacatttgaaacaaatttttcagtggaagatggggctgggttgaca 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43344121 gtataggccacaaattaatcaaggtgcaactaaaaaagagttaaagtatggaaatacatttgaaacaaatttttcagtggaagatggggctgggttgaca 43344220  T
Q  204 gctaatgatataaaggtgacaatgtatgcaccacctttcactactcatggtttctccatgggtcagaggcttataattctcaagatcgatgagct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43344221 gctaatgatataaaggtgacaatgtatgcaccacctttcactactcatggtttctccatgggtcagaggcttataattctcaagatcgatgagct 43344315  T

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