View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_34 (Length: 260)
Name: NF14118_low_34
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 43383301 - 43383410
Alignment:
| Q |
132 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
231 |
Q |
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| T |
43383301 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
43383400 |
T |
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| Q |
232 |
ggcattaacc |
241 |
Q |
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| T |
43383401 |
ggcattaacc |
43383410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 25870023 - 25870131
Alignment:
| Q |
133 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagag |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25870023 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagag |
25870122 |
T |
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| Q |
233 |
gcattaacc |
241 |
Q |
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| T |
25870123 |
gcattaacc |
25870131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43383185 - 43383282
Alignment:
| Q |
1 |
gataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatgattctgttaatgttactggtaagaagaagcgtaaggaattgggtg |
100 |
Q |
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| T |
43383185 |
gataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatga------tactgttactggtaagaagaagagtaaggaattgggtg |
43383278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 25869981 - 25870009
Alignment:
| Q |
76 |
aagaagaagcgtaaggaattgggtgggga |
104 |
Q |
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| T |
25869981 |
aagaagaagcgtaaggaattgggtgggga |
25870009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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