View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_low_35 (Length: 256)

Name: NF14118_low_35
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_low_35
NF14118_low_35
[»] chr7 (9 HSPs)
chr7 (88-256)||(39426986-39427154)
chr7 (88-256)||(31207400-31207568)
chr7 (91-256)||(32353168-32353333)
chr7 (87-215)||(32354524-32354651)
chr7 (16-88)||(32353053-32353125)
chr7 (16-88)||(39426874-39426946)
chr7 (16-88)||(31207288-31207360)
chr7 (16-79)||(32354699-32354762)
chr7 (117-196)||(2434136-2434216)
[»] chr6 (13 HSPs)
chr6 (88-256)||(6950504-6950672)
chr6 (92-256)||(24042337-24042501)
chr6 (88-256)||(19975355-19975522)
chr6 (87-215)||(27077464-27077591)
chr6 (17-88)||(34234863-34234934)
chr6 (16-88)||(6950392-6950464)
chr6 (88-196)||(15516247-15516356)
chr6 (16-88)||(24042220-24042293)
chr6 (15-88)||(19975562-19975634)
chr6 (117-196)||(34234713-34234793)
chr6 (87-173)||(14922656-14922743)
chr6 (16-81)||(27077637-27077700)
chr6 (87-155)||(34096777-34096846)
[»] chr2 (12 HSPs)
chr2 (88-256)||(10938805-10938972)
chr2 (88-256)||(10944667-10944834)
chr2 (88-246)||(26969723-26969881)
chr2 (16-88)||(10938693-10938765)
chr2 (16-88)||(10944555-10944627)
chr2 (16-88)||(26969611-26969683)
chr2 (136-256)||(9810435-9810555)
chr2 (204-256)||(68912-68964)
chr2 (87-146)||(14632126-14632185)
chr2 (117-196)||(19436274-19436354)
chr2 (22-83)||(14632021-14632082)
chr2 (198-230)||(14632208-14632240)
[»] chr1 (10 HSPs)
chr1 (87-256)||(24172267-24172436)
chr1 (88-255)||(1967995-1968153)
chr1 (88-256)||(49388292-49388458)
chr1 (88-256)||(38826207-38826374)
chr1 (87-215)||(47325179-47325306)
chr1 (16-88)||(49388180-49388252)
chr1 (16-88)||(1968193-1968265)
chr1 (16-83)||(38826098-38826165)
chr1 (16-83)||(47325358-47325426)
chr1 (16-81)||(24172482-24172547)
[»] chr4 (11 HSPs)
chr4 (88-256)||(6668610-6668779)
chr4 (88-252)||(43291200-43291364)
chr4 (87-215)||(8989785-8989912)
chr4 (87-215)||(6805969-6806096)
chr4 (16-88)||(6668498-6668570)
chr4 (16-88)||(43291404-43291476)
chr4 (117-196)||(6685397-6685477)
chr4 (199-253)||(17894310-17894364)
chr4 (30-81)||(8989688-8989739)
chr4 (117-196)||(6661128-6661208)
chr4 (119-171)||(572521-572573)
[»] chr5 (6 HSPs)
chr5 (88-256)||(16086002-16086170)
chr5 (87-215)||(26052561-26052688)
chr5 (16-88)||(16085889-16085961)
chr5 (16-81)||(26052734-26052797)
chr5 (151-253)||(31307846-31307948)
chr5 (87-196)||(25635837-25635948)
[»] chr3 (13 HSPs)
chr3 (88-256)||(53727542-53727710)
chr3 (88-256)||(14657234-14657402)
chr3 (88-256)||(19930926-19931094)
chr3 (87-215)||(32895329-32895456)
chr3 (88-223)||(42254447-42254581)
chr3 (16-88)||(42254335-42254407)
chr3 (16-88)||(16357113-16357185)
chr3 (16-88)||(19930814-19930886)
chr3 (16-81)||(14657449-14657514)
chr3 (16-81)||(53727430-53727495)
chr3 (124-196)||(16363776-16363849)
chr3 (16-88)||(11634876-11634947)
chr3 (16-81)||(32895502-32895564)
[»] scaffold0028 (2 HSPs)
scaffold0028 (92-252)||(126914-127074)
scaffold0028 (16-83)||(127112-127179)
[»] chr8 (11 HSPs)
chr8 (87-177)||(38641574-38641664)
chr8 (16-88)||(31183194-31183266)
chr8 (92-196)||(38677874-38677979)
chr8 (16-88)||(38678023-38678093)
chr8 (111-215)||(43657099-43657202)
chr8 (88-196)||(31183044-31183154)
chr8 (87-196)||(44316162-44316273)
chr8 (17-81)||(38641464-38641528)
chr8 (18-74)||(43657249-43657305)
chr8 (87-195)||(21256531-21256641)
chr8 (87-196)||(29278351-29278462)
[»] scaffold0012 (2 HSPs)
scaffold0012 (87-177)||(201713-201803)
scaffold0012 (16-81)||(201849-201914)
[»] scaffold0014 (2 HSPs)
scaffold0014 (16-88)||(86402-86474)
scaffold0014 (117-157)||(86292-86332)
[»] scaffold0086 (1 HSPs)
scaffold0086 (87-196)||(38098-38209)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 39426986 - 39427154
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39426986 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgctacaatcaaacacca 39427085  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39427086 cccataaaggcttatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 39427154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 31207400 - 31207568
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| || |||||||||    
T  31207400 ttcatgagtgctctagagacccgccactgtctcatgcaagcggccccaattgacactcatataagtgattccatctagtgtatgctagaaccaaacacca 31207499  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||  |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  31207500 cccataagggcttatggtaatcattaaaagcctttaaagcttatccctcaattttatattatttagcac 31207568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 32353168 - 32353333
Alignment:
Q  91 atgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacaccaccc 190  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | || |||||||||    
T  32353168 atgagtgctccagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgatttcatctagtgtatgctacgaccatacaccaccc 32353267  T
Q  191 ataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    ||||||  |||||||||||||||||||  || | | |||| |||||||||||||||||||||||||    
T  32353268 ataagggcttatggtaatcattaaaagtcttaacaacttatccatcaattttatattatttagcac 32353333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 32354651 - 32354524
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||     
T  32354651 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaaccacacact 32354552  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    | || ||| | ||||||||||||||||||    
T  32354551 aacc-taaaggattatggtaatcattaaa 32354524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 32353053 - 32353125
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  32353053 ctatggaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtt 32353125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 39426874 - 39426946
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||    
T  39426874 ctatggaacccaagacacttgttgtatgttagaagtcccacaatcacgttacacccccacaattcttgctgtt 39426946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 31207288 - 31207360
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||| |||||  |||||||||| || ||||||||||||||||||||||||||||||    
T  31207288 ctatggaacccaagacacttggtgtatactagaggtctcgcagtcacattacacccccacaattcttgctgtt 31207360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 32354762 - 32354699
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaatt 79  Q
    ||||||||||||| ||||||| |||||| ||||||||||| ||||||| |||||||||||||||    
T  32354762 ctatggaacccaatacacttgatgtatgctagaggtctcataatcacaatacacccccacaatt 32354699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 2434216 - 2434136
Alignment:
Q  117 tctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaacaccacccataagg 196  Q
    |||||| || |||||||||||||||||||| ||||||||||   || |||||||||| | ||||| |||||||||||||||    
T  2434216 tctcatacaggcggccccacttgacactcacataggtgatttcttcaagtgtatgctgcaaatcatacaccacccataagg 2434136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 6950504 - 6950672
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6950504 ttcatgagtgctctggagatccgccacggtctcatgcaagcagccccacttgacactcatataggtgattccatctagtgtatgctacaatcaaacacca 6950603  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6950604 cccataaggacttatcataatcattaaaagcttttaaagcttacccatcaattatatattatttagcac 6950672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 24042337 - 24042501
Alignment:
Q  92 tgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacaccaccca 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||    
T  24042337 tgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgctacaaccatacaccaccca 24042436  T
Q  192 taaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    ||| |  |||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||    
T  24042437 taaaggcttatggtaatcattaaaagcctttaaagtttatccctcaattttatattatttagcac 24042501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 19975522 - 19975355
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||||| | || ||||||    
T  19975522 ttcatgagtgctctacagacccgtcacggtctcatgcaagcggtcgcacttgacactcatataggtgattccatctggtgtatgctactaccatacacca 19975423  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
     ||||||||  |||||||||||||||||||| | ||||||||| || ||||||||||||||||||||||    
T  19975422 tccataagggcttatggtaatcattaaaagc-tctaaagcttatccctcaattttatattatttagcac 19975355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 27077591 - 27077464
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||| || |||||    
T  27077591 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacacttatataggtgattccatctagtgcctgctacaaccacacacc 27077492  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    |||| ||| |  |||||| ||||||||||    
T  27077491 accc-taaaggcttatggaaatcattaaa 27077464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 34234934 - 34234863
Alignment:
Q  17 tatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34234934 tatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 34234863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 6950392 - 6950464
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6950392 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacactcccacaattcttgctgtt 6950464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 15516356 - 15516247
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa-tcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||  |||  ||| |||||||| | ||| ||| |||||    
T  15516356 ttcatgagtgctctagagacccgccacggtctcatgcaagcggctccacttgacacccatataggcaatttcatcaagtgtatgttgcaagtcatacacc 15516257  T
Q  187 acccataagg 196  Q
    || |||||||    
T  15516256 actcataagg 15516247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 24042220 - 24042293
Alignment:
Q  16 ctatggaaccc-aagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  24042220 ctatggaaccccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccataattcttgctgtt 24042293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 19975634 - 19975562
Alignment:
Q  15 actatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    |||||||| ||||||||||| ||||||||  ||||||||||||| ||||| |||||||||||||||||||||||    
T  19975634 actatggaccccaagacact-gttgtatgcaagaggtctcacaagcacatcacacccccacaattcttgctgtt 19975562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 34234793 - 34234713
Alignment:
Q  117 tctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa-tcaaacaccacccataagg 196  Q
    ||||||||||||||||||||||||| |||||||||| ||||  ||| |||||||||| ||| ||| ||||||| |||||||    
T  34234793 tctcatgcaagcggccccacttgactctcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacgcataagg 34234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 14922743 - 14922656
Alignment:
Q  87 tttcatgagtgctctagagaccc-gccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgct 173  Q
    ||||||||||||||||||||    |||| | |||||| ||||||||||||||||||||||| ||||||||||  ||| ||||||||||    
T  14922743 tttcatgagtgctctagagattttgccaagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgct 14922656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 27077700 - 27077637
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||| ||||  ||||||||||||||    
T  27077700 ctatggaacccaatacacttgatgtatgctagaggtctcacaatcgcatt--acccccacaattct 27077637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 34096777 - 34096846
Alignment:
Q  87 tttcatgagtgctctagagacc-cgccacggtctcatgcaagcggccccacttgacactcatataggtga 155  Q
    ||||||||||||||||||||   |||||   |||||||||||||||||||||||||||||| ||||||||    
T  34096777 tttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtga 34096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 10938805 - 10938972
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10938805 ttcatgagtgctctagagacccgccacggtctcatacaagcggccccacttgaaactcatataggtgattccatctagtgtatgctacaatcaaacacca 10938904  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    || ||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10938905 ccaataagggcttatggtaatcattaaaagcttttaaa-cttacccatcaattttatattatttagcac 10938972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 10944667 - 10944834
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10944667 ttcatgagtgctctagagacccgccacggtctcatacaagcggccccacttgaaactcatataggtgattccatctagtgtatgctacaatcaaacacca 10944766  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    || ||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10944767 ccaataagggcttatggtaatcattaaaagcttttaaa-cttacccatcaattttatattatttagcac 10944834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 26969723 - 26969881
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||| || ||||||    
T  26969723 ttcatgaatgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatatagatgattccatctagtgcatgctccaaccacacacca 26969822  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatat 246  Q
    |||||||||  |||||||||||||||||||   || || ||||||||||||||||||||    
T  26969823 cccataagggcttatggtaatcattaaaagtcgtttaaccttacccatcaattttatat 26969881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 10938693 - 10938765
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||||||||||||||||||    
T  10938693 ctatggaacccaagacacttgttatgtgctagagatctcacaatcacactacacccccacaattcttgctgtt 10938765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 10944555 - 10944627
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||| | || ||||| ||||||||||||| ||||||||||||||||||||||||    
T  10944555 ctatggaacccaagacacttgttatgtgctagagatctcacaatcacactacacccccacaattcttgctgtt 10944627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 26969611 - 26969683
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||| ||| ||||||    
T  26969611 ctatggaacccaagacacttgttatgtgttagaggtctcacaatgacattacacccccgcaaatctagctgtt 26969683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 9810435 - 9810555
Alignment:
Q  136 cttgacactcatataggtgattcaatctagtgtatgctacaatcaaacaccacccataaggaattatggtaatcattaaaagcttttaaagcttacccat 235  Q
    ||||||||| |||||  |||||  ||||||||||||||||||||| |  |||| ||||||   |||||||||||||||||||  |||||| | || || |    
T  9810435 cttgacacttatatatatgatttcatctagtgtatgctacaatcatatgccactcataagagcttatggtaatcattaaaagtctttaaaacatatcctt 9810534  T
Q  236 caattttatattatttagcac 256  Q
    ||||||||||||| |||||||    
T  9810535 caattttatattaattagcac 9810555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 68912 - 68964
Alignment:
Q  204 gtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  68912 gtaatcattaaaagcctttaaagcttatccctcaattttatattatttagcac 68964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 14632126 - 14632185
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactca 146  Q
    ||||| ||||||| || ||||||| ||| |||||||||||||||||||||||||||||||    
T  14632126 tttcacgagtgctttatagacccgtcacagtctcatgcaagcggccccacttgacactca 14632185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 19436354 - 19436274
Alignment:
Q  117 tctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgct-acaatcaaacaccacccataagg 196  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||  ||| |||||||||| | ||||| |||||||||||||||    
T  19436354 tctcatacaaacgggcccacttgacactcacataggtgatttcatcaagtgtatgctgaaaatcatacaccacccataagg 19436274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 14632021 - 14632082
Alignment:
Q  22 aacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttg 83  Q
    ||||||| ||||||| |||||| ||||||||||| ||||| |||||||||||  ||||||||    
T  14632021 aacccaatacacttgatgtatgctagaggtctcataatcaaattacacccccgtaattcttg 14632082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 14632208 - 14632240
Alignment:
Q  198 attatggtaatcattaaaagcttttaaagctta 230  Q
    |||||||||||||||||||||| ||||||||||    
T  14632208 attatggtaatcattaaaagctcttaaagctta 14632240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 87 - 256
Target Start/End: Complemental strand, 24172436 - 24172267
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||| || |||||    
T  24172436 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgatttcatctaatgtatgctacaaccatacacc 24172337  T
Q  187 acccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||| |  | |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  24172336 acccataaaggctaatggcaatcattaaaagcctttaaagcttacccctcaattttatattatttagcac 24172267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 1968153 - 1967995
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  1968153 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgttacaatcaaacacca 1968054  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagca 255  Q
    ||||||||   ||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  1968053 cccataagtgcttatggtaatcattaaaa---------gcttacccatcaattttatattatttagca 1967995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 49388292 - 49388458
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| | || ||| ||    
T  49388292 ttcatgagtgttctagagacccgccatggtctcatgcaagcggccccacttgacactcatataagtgattccatttagtgtatgctacgaccatacatca 49388391  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    ||||||| |  |||||||||||||||||| | ||||||||||| || |||  ||| |||||||||||||    
T  49388392 cccataatggcttatggtaatcattaaaaacctttaaagcttatccctca--tttttattatttagcac 49388458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 38826207 - 38826374
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| ||| ||||||  |||||| ||||||||| | || ||||||    
T  38826207 ttcatgagtgctctagagaccagccacaatctcatgcaagcggccccacttgacactcacataagtgattttatctagcgtatgctacgaccatacacca 38826306  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||  |||||||||||||| ||||  |||||| |||| || ||||||||||||||||||||||    
T  38826307 cccataagggcttatggtaatcatt-aaagtctttaaaacttatccctcaattttatattatttagcac 38826374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 47325306 - 47325179
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||| || |||||    
T  47325306 tttcatgagtgctctagagacctgccacggtctcatgcaagcggccctacttcacactcatataggtgattccatctagtgcatgctacaaccacacacc 47325207  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    |||| ||| |  ||||||||| |||||||    
T  47325206 accc-taaaggcttatggtaaccattaaa 47325179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 49388180 - 49388252
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  49388180 ctatggaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgctgtt 49388252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 1968265 - 1968193
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1968265 ctatgaaatccaagacacttattgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 1968193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 38826098 - 38826165
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttg 83  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  38826098 ctatggaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttg 38826165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 47325426 - 47325358
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacac-ccccacaattcttg 83  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  47325426 ctatggaacccaatacacttgatgtatgttagaggtctcataatcacattacaccccccacaattcttg 47325358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 24172547 - 24172482
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||||||||||| ||||||| |||||| ||||||| | |||||||||||||||||||||||||||    
T  24172547 ctatggaacccaatacacttgatgtatgctagaggtttaacaatcacattacacccccacaattct 24172482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 6668610 - 6668779
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| | || ||||||    
T  6668610 ttcatgagtgctctagagacctgccacggtctcatacaagcggccccacttgacactcatataggtgattccatctagcgtatgctactaccatacacca 6668709  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttata-ttatttagcac 256  Q
    |||||||||  |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  6668710 cccataagggcttatggtaatcattaaaagctttcgaagcttacccatcaattttatatttatttagcac 6668779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 43291364 - 43291200
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||    
T  43291364 ttcatgagtgctctagagacccgccacggtctcatacaagcggccccacttgacactcatataggtgattccatctagtgtatgctacgaccatacacca 43291265  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattattta 252  Q
    || ||||||  ||||||||||||||||||   || | | |||| |||||||||||||||||||||    
T  43291264 cctataagggcttatggtaatcattaaaaatcttaacaacttatccatcaattttatattattta 43291200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 8989785 - 8989912
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  8989785 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaatcacacacc 8989884  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    |||| ||| |  |||||||||||||||||    
T  8989885 accc-taaaggcttatggtaatcattaaa 8989912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 6806096 - 6805969
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||    
T  6806096 tttcatgagtgctctagagacccaccacggtcccatgcaagcggtcccacttgacactcatataggtgattccatctagtgcatgctacaaccacacacc 6805997  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    |||| ||| |  |||||||||||||||||    
T  6805996 accc-taaaggcttatggtaatcattaaa 6805969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 6668498 - 6668570
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  6668498 ctatggaacccaagacacttggtgtatgctagaggtctcacagtcacattacacccccacaattcttgctgtt 6668570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 43291476 - 43291404
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  43291476 ctatggaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtt 43291404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 6685477 - 6685397
Alignment:
Q  117 tctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaacaccacccataagg 196  Q
    |||||| ||||||||||||||||||||||| ||||||||||  ||| |||||||||| | ||||| |||||||||||||||    
T  6685477 tctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatacaccacccataagg 6685397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 17894364 - 17894310
Alignment:
Q  199 ttatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttag 253  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  17894364 ttatcgtaatcattaaaaacttttaaagcttactcatcaattttatattatttag 17894310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 8989688 - 8989739
Alignment:
Q  30 acacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  8989688 acacttgatgtatgctagaggtctcataatcacattacacccccacaattct 8989739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 6661128 - 6661208
Alignment:
Q  117 tctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaacaccacccataagg 196  Q
    |||||| ||||||||||||||||||||||| ||||||||||  ||| |||| ||| | | ||||| |||||||||||||||    
T  6661128 tctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgcatgatgcaaatcatacaccacccataagg 6661208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 572521 - 572573
Alignment:
Q  119 tcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatg 171  Q
    |||| ||||||||||||||||||||||| ||||||||||  ||| ||||||||    
T  572521 tcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatg 572573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 16086002 - 16086170
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||| || ||||||    
T  16086002 ttcatgagtgctctaaagacccgccacagtctcatacaagcggcctcacttgacactcatataggtgattccatctagtgcatgctccaaccacacacca 16086101  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  16086102 cccataagggcttatggtaatcattaaaagcattttaagcttacccatcaattttatattatttagcac 16086170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 26052688 - 26052561
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||| |    
T  26052688 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaaccacacaac 26052589  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    |||| ||| |  |||||| ||||||||||    
T  26052588 accc-taaaggcttatggaaatcattaaa 26052561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 16085889 - 16085961
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  16085889 ctatggaacccaagacacttgctatatgttagaggtctcacagtcacattacacccacacaattcatgctgtt 16085961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 26052797 - 26052734
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||||  ||||||||||||||    
T  26052797 ctatggaacccaatacacttgatgtatgctagaggtctcacaatcacatt--acccccacaattct 26052734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 31307948 - 31307846
Alignment:
Q  151 ggtgattcaatctagtgtatgctacaatcaaacaccacccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatt 250  Q
    |||||||  |||| ||| |||||||||||| |||||  | |||| |  |||||||||||||||||||  |||||| |||| |||||||||||||||||||    
T  31307948 ggtgattttatctggtgaatgctacaatcatacaccgtcaataatggtttatggtaatcattaaaagtatttaaaacttaaccatcaattttatattatt 31307849  T
Q  251 tag 253  Q
    |||    
T  31307848 tag 31307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 25635837 - 25635948
Alignment:
Q  87 tttcatgagtgctctagagacc-cgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaaca 184  Q
    |||||||||||||| |||||   ||||| | || ||| ||||||  ||||||||||||||| ||||||||||  ||| |||| ||||| | ||||| |||    
T  25635837 tttcatgagtgctccagagatttcgccaagatcacatacaagcgatcccacttgacactcacataggtgatttcatcaagtgcatgctgcaaatcataca 25635936  T
Q  185 ccacccataagg 196  Q
    ||||||||||||    
T  25635937 ccacccataagg 25635948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 53727542 - 53727710
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||| || ||||||    
T  53727542 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatccagtgcatgctccaaccacacacca 53727641  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||  ||||||||||||||||||||  || ||||||||||||||||||||||| | |||||||    
T  53727642 cccataagggcttatggtaatcattaaaagccgtttaagcttacccatcaattttatataaattagcac 53727710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 14657402 - 14657234
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||| | || ||||||    
T  14657402 ttcatgagtgctctagaggcccgccacggtctcatgcaagcggcctcacttcacactcatatagctgattccatctagtgtatgctacgaccatacacca 14657303  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||  |||||||||||||||||||   ||| | |||| |||||||||||||||||||||||||    
T  14657302 cccataagggcttatggtaatcattaaaagtccttacaacttatccatcaattttatattatttagcac 14657234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 256
Target Start/End: Original strand, 19930926 - 19931094
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||| ||||||||||||   ||||||||||||||||| |||||||||    
T  19930926 ttcatgagtgctctagaaacccaccacggtttcatgcaagctgccccacttgacacttatataggtgatttcgtctagtgtatgctacaaccaaacacca 19931025  T
Q  188 cccataaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattatttagcac 256  Q
    |||||||||  |||||||| ||||||||||  ||||||||||| || ||||||||||||||||||||||    
T  19931026 cccataagggcttatggtattcattaaaagtatttaaagcttatccctcaattttatattatttagcac 19931094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 32895456 - 32895329
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||    
T  32895456 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgcatgctacaaccacacacc 32895357  T
Q  187 acccataaggaattatggtaatcattaaa 215  Q
    |||| ||| |  |||||| ||||||||||    
T  32895356 accc-taaaggcttatggaaatcattaaa 32895329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 42254447 - 42254581
Alignment:
Q  88 ttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacacca 187  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||     
T  42254447 ttcatgaatgctctaga-acccgtcacggtctcatgcaagcggccccagttgacactcatataggtgattccatctagtgtatgctacaaccaaacacct 42254545  T
Q  188 cccataaggaattatggtaatcattaaaagctttta 223  Q
     ||||||||  |||| ||||||||||||||| ||||    
T  42254546 accataagggcttatagtaatcattaaaagccttta 42254581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 42254335 - 42254407
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  42254335 ctatggaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgatgtt 42254407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 16357113 - 16357185
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  16357113 ctatggaacccaagacacttggtgtatgctagaggtctcacaatcacattacaccctcacaattcttgttgtt 16357185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 19930814 - 19930886
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  19930814 ctatggaactcaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttgttgtt 19930886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 14657514 - 14657449
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  14657514 ctatgaaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattct 14657449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 53727430 - 53727495
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  53727430 ctatggaatccaagacacttgttatgtgttagaggtctcacaatcacattacacccccagaattct 53727495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 16363776 - 16363849
Alignment:
Q  124 caagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa-tcaaacaccacccataagg 196  Q
    ||||||||||||||||||||||||||||| ||||  ||| |||||||||| ||| ||| |||||||||||||||    
T  16363776 caagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacccataagg 16363849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 11634876 - 11634947
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    |||||||||||| |||| |||||| |||||||||| |||||||||| |||||||||||  |||||||| ||||    
T  11634876 ctatggaaccca-gacaattgttgcatgttagaggcctcacaatcatattacacccccctaattcttgttgtt 11634947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 32895564 - 32895502
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||||||||||| ||||||| |||||| ||||||||||| |||||||||  ||||||||||||||    
T  32895564 ctatggaacccaatacacttggtgtatgctagaggtctca-aatcacatt--acccccacaattct 32895502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 127074 - 126914
Alignment:
Q  92 tgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacaccaccca 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||    
T  127074 tgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctagtgtatgctacgaccatacaccaccca 126975  T
Q  192 taaggaattatggtaatcattaaaagcttttaaagcttacccatcaattttatattattta 252  Q
    ||||   |||||||||||||||||||  || | | |||| ||||||| |||||||||||||    
T  126974 taagagcttatggtaatcattaaaagtcttaacaacttatccatcaaatttatattattta 126914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 127179 - 127112
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttg 83  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  127179 ctatggaacccaagacacttgttgtatgcaagaggtctcacaatcacattacacccccacaattcttg 127112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 38641574 - 38641664
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||    
T  38641574 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattccatccggtgcatgctacaa 38641664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 31183266 - 31183194
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31183266 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 31183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 38677979 - 38677874
Alignment:
Q  92 tgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa-tcaaacaccaccc 190  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||  ||| ||||||| || ||| ||| |||||||||    
T  38677979 tgagtgctctagagacctgccacggtctcatgcaagcggccccactcgacacccatataggcgatttcatcaagtgtatactgcaactcatacaccaccc 38677880  T
Q  191 ataagg 196  Q
    ||||||    
T  38677879 ataagg 38677874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 38678093 - 38678023
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38678093 ctatggaacc-aagacacttgttgtatgttagaggtctcacaatcacattaca-ccccacaattcttgctgtt 38678023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 43657202 - 43657099
Alignment:
Q  111 ccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaatcaaacaccacccataaggaattatggtaatca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||| || ||||||||| ||| |  ||||| ||||||    
T  43657202 ccacggtctcatgcaagcggccccacttgacactcatataggtgattccatctggagcatgctacaaccacacaccaccc-taaaggcttatgctaatca 43657104  T
Q  211 ttaaa 215  Q
    |||||    
T  43657103 ttaaa 43657099  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 31183154 - 31183044
Alignment:
Q  88 ttcatgagtgctctagagaccc-gccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa-tcaaacac 185  Q
    |||||||||||||||||||    |||| | |||||||||||||||||||||||||||||||||||| ||||  ||| |||||||||| ||| ||| ||||    
T  31183154 ttcatgagtgctctagagattttgccaagatctcatgcaagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacac 31183055  T
Q  186 cacccataagg 196  Q
    |||||||||||    
T  31183054 cacccataagg 31183044  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 44316273 - 44316162
Alignment:
Q  87 tttcatgagtgctctagagacc-cgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaaca 184  Q
    ||||||||||||||||||||   |||||   |||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||| | ||||| |||    
T  44316273 tttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcataca 44316174  T
Q  185 ccacccataagg 196  Q
    |||| |||||||    
T  44316173 ccactcataagg 44316162  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 38641464 - 38641528
Alignment:
Q  17 tatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    |||||||||||| | ||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  38641464 tatggaacccaatatacttgatgtatgctagaggtctcataatcacattacacccccacaattct 38641528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 43657305 - 43657249
Alignment:
Q  18 atggaacccaagacacttgttgtatgttagaggtctcacaatcacattacaccccca 74  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  43657305 atggaactcaatacacttgatgtatgctagaggtctcacaatcacattacaccccca 43657249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 21256531 - 21256641
Alignment:
Q  87 tttcatgagtgctctagagacc-cgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaaca 184  Q
    |||||||||||||| |||||   ||||| | |||||| ||||||||||||||||||| ||| ||||||||||  ||| |||||||| | | ||||| |||    
T  21256531 tttcatgagtgctcaagagagttcgccaagatctcatacaagcggccccacttgacattcacataggtgatttcatcaagtgtatgttgcaaatcataca 21256630  T
Q  185 ccacccataag 195  Q
    |||||||||||    
T  21256631 ccacccataag 21256641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 29278462 - 29278351
Alignment:
Q  87 tttcatgagtgctctagagacc-cgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaaca 184  Q
    |||||||||||| |||||||   ||||| | || ||| ||||||||||||||||||||||| ||||| ||||  ||| |||||||||| | ||||| |||    
T  29278462 tttcatgagtgcactagagatttcgccaagatcccatacaagcggccccacttgacactcacataggagatttcatcaagtgtatgctgcaaatcataca 29278363  T
Q  185 ccacccataagg 196  Q
    ||||||| ||||    
T  29278362 ccacccacaagg 29278351  T

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Target: scaffold0012 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 201803 - 201713
Alignment:
Q  87 tttcatgagtgctctagagacccgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctacaa 177  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  201803 tttcatgagtgctctagagacctaccacggtctcatgcaagcggccccacttaacactcatataggtgattccatctagtggatgctacaa 201713  T

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Target: scaffold0012; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 201914 - 201849
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattct 81  Q
    ||||| ||||||| ||||||| |||||  ||||||||||| |||||||||||||||||||||||||    
T  201914 ctatgaaacccaatacacttgatgtatcctagaggtctcaaaatcacattacacccccacaattct 201849  T

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Target: scaffold0014 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 86474 - 86402
Alignment:
Q  16 ctatggaacccaagacacttgttgtatgttagaggtctcacaatcacattacacccccacaattcttgctgtt 88  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||    
T  86474 ctatggaacccaagacacttgttgtatgttagaggtctcgtaatcacattacacctccacaattcttgttgtt 86402  T

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Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 86332 - 86292
Alignment:
Q  117 tctcatgcaagcggccccacttgacactcatataggtgatt 157  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  86332 tctcatgcaagcggccccacttgacactcatataggcgatt 86292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 38098 - 38209
Alignment:
Q  87 tttcatgagtgctctagagacc-cgccacggtctcatgcaagcggccccacttgacactcatataggtgattcaatctagtgtatgctac-aatcaaaca 184  Q
    ||||||||||||||||||||   |||||   |||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||| | ||||| |||    
T  38098 tttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtgattttatcaagtgtatgctgcaaatcataca 38197  T
Q  185 ccacccataagg 196  Q
    ||||||||||||    
T  38198 ccacccataagg 38209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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