View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14118_low_36 (Length: 255)
Name: NF14118_low_36
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14118_low_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 36702395 - 36702649
Alignment:
| Q |
1 |
cacttgagtttgccaagaaaatcatcagaaatgtttgttgtggagaatttgcttcagtttccagattctgttcctagcagtatcagagcaaagagaggct |
100 |
Q |
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| T |
36702395 |
cacttgagtttgccaagaaaatcatcagaaatgtttgttgtggagaaattgcttcagtttccagattctgttcctagcagtatcagagcaaagagaggct |
36702494 |
T |
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| Q |
101 |
ttgcaacacatcctagaagccttgccgaaagggtaagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggt |
200 |
Q |
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| T |
36702495 |
ttgcaacacatcctagaagccttgccgaaagggtaagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggt |
36702594 |
T |
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| Q |
201 |
cagaatcatcatcacacagtttttgatttttcccccttttgagacaattatgttt |
255 |
Q |
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| T |
36702595 |
cagaatcatcatcacacagttgttgatttttcccccttttgagacaattatgttt |
36702649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 18241272 - 18241042
Alignment:
| Q |
1 |
cacttgagtttgccaagaaaatcatcagaaatgtttgttgtggagaatttgcttcagtttccagattctgttcctagcagtatcagagcaaagagaggct |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
18241272 |
cacttgagtttgacaagaaaatcatcagaaatgtttgttgtggagaatcttcttcagtttccagattctgttacaagcagtattagagcaaagagaggct |
18241173 |
T |
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| Q |
101 |
ttgcaacacatcctagaagccttgccgaaagggtaagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggt |
200 |
Q |
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| T |
18241172 |
ttgcaagacatcctagaagccttgccaagagggtgagaagaactcggataaatgaacgaatgagaaaattgcaagaggtcgttttaaacattgataaggt |
18241073 |
T |
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| Q |
201 |
cagaatcatcatcacacagtttttgattttt |
231 |
Q |
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| T |
18241072 |
cagaatcatcatcacacaattgttgattttt |
18241042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 21324190 - 21324256
Alignment:
| Q |
134 |
taagaagaactcggataagtgaacgaatgagaaaattgcaagagattgttccaaacattgataaggt |
200 |
Q |
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| T |
21324190 |
taagaagaactaagatcagtgaaagaatgaggaaattgcaagagcttgttccaaacatggataaggt |
21324256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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