View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14118_low_37 (Length: 250)

Name: NF14118_low_37
Description: NF14118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14118_low_37
NF14118_low_37
[»] chr2 (15 HSPs)
chr2 (176-240)||(36416790-36416854)
chr2 (54-140)||(10285847-10285932)
chr2 (68-192)||(3235395-3235520)
chr2 (68-139)||(11513886-11513957)
chr2 (68-139)||(22681196-22681267)
chr2 (89-192)||(10143104-10143210)
chr2 (55-139)||(39983330-39983413)
chr2 (70-133)||(44238047-44238110)
chr2 (122-185)||(29430695-29430760)
chr2 (159-196)||(41033055-41033092)
chr2 (54-135)||(43635099-43635179)
chr2 (104-147)||(14666527-14666571)
chr2 (104-185)||(17952748-17952832)
chr2 (68-147)||(33942129-33942209)
chr2 (68-147)||(35485896-35485976)
[»] chr3 (10 HSPs)
chr3 (54-181)||(24887282-24887410)
chr3 (68-192)||(27792804-27792931)
chr3 (68-192)||(38462213-38462340)
chr3 (73-143)||(43115040-43115110)
chr3 (91-147)||(43875627-43875684)
chr3 (71-139)||(14548735-14548803)
chr3 (68-147)||(23785234-23785314)
chr3 (54-185)||(40122751-40122883)
chr3 (80-134)||(42733960-42734014)
chr3 (107-139)||(43116478-43116510)
[»] chr7 (8 HSPs)
chr7 (83-192)||(27481320-27481432)
chr7 (68-139)||(38010702-38010773)
chr7 (104-192)||(5369738-5369827)
chr7 (54-145)||(44151478-44151569)
chr7 (68-139)||(40439042-40439113)
chr7 (69-147)||(39505936-39506014)
chr7 (54-99)||(12234887-12234931)
chr7 (110-192)||(33894555-33894639)
[»] chr5 (13 HSPs)
chr5 (75-192)||(31030148-31030266)
chr5 (58-185)||(18704038-18704166)
chr5 (80-155)||(41016150-41016226)
chr5 (73-185)||(12460017-12460131)
chr5 (68-139)||(37588371-37588442)
chr5 (53-139)||(37690633-37690719)
chr5 (53-139)||(37526196-37526281)
chr5 (75-139)||(2568646-2568710)
chr5 (68-181)||(14295449-14295565)
chr5 (159-192)||(14714944-14714977)
chr5 (68-174)||(28586777-28586886)
chr5 (83-139)||(29054896-29054952)
chr5 (91-192)||(39257421-39257524)
[»] chr4 (10 HSPs)
chr4 (69-192)||(21157700-21157826)
chr4 (54-147)||(30207569-30207662)
chr4 (46-147)||(42866047-42866148)
chr4 (68-155)||(51197493-51197580)
chr4 (68-133)||(11802528-11802593)
chr4 (90-139)||(18630668-18630717)
chr4 (68-139)||(49219127-49219198)
chr4 (68-180)||(54325048-54325163)
chr4 (54-139)||(50800028-50800111)
chr4 (107-192)||(24160545-24160633)
[»] chr6 (7 HSPs)
chr6 (54-139)||(2117391-2117475)
chr6 (82-185)||(33500506-33500612)
chr6 (54-180)||(281846-281974)
chr6 (138-192)||(4247717-4247772)
chr6 (80-161)||(1401074-1401156)
chr6 (73-139)||(28088238-28088304)
chr6 (67-119)||(7931799-7931851)
[»] chr1 (15 HSPs)
chr1 (73-134)||(35590908-35590969)
chr1 (68-139)||(12564885-12564956)
chr1 (68-139)||(23902078-23902149)
chr1 (73-192)||(17269182-17269304)
chr1 (45-190)||(43029391-43029537)
chr1 (54-173)||(4622044-4622165)
chr1 (125-192)||(23895268-23895338)
chr1 (68-137)||(39347978-39348047)
chr1 (90-192)||(45107555-45107662)
chr1 (91-139)||(25005831-25005879)
chr1 (104-136)||(26946494-26946526)
chr1 (68-147)||(30257662-30257742)
chr1 (68-136)||(45205059-45205127)
chr1 (123-180)||(45999354-45999414)
chr1 (68-139)||(47960634-47960706)
[»] chr8 (10 HSPs)
chr8 (54-137)||(11183535-11183617)
chr8 (81-172)||(10437837-10437930)
chr8 (107-180)||(11059745-11059814)
chr8 (68-140)||(31705072-31705144)
chr8 (89-179)||(13561344-13561437)
chr8 (159-192)||(8629041-8629074)
chr8 (54-139)||(11795080-11795164)
chr8 (74-192)||(29973013-29973134)
chr8 (72-132)||(7918788-7918848)
chr8 (68-181)||(31862436-31862552)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 36416854 - 36416790
Alignment:
Q  176 ttataaataatcacttaattaggatcttagacgtaatagttttagttctgtctattgtgttctgt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36416854 ttataaataatcacttaattaggatcttagacgtaatagttttagttctgtctattgtgttctgt 36416790  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 10285932 - 10285847
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaac 140  Q
    ||||||||||| || |||||||||| | |||||| ||||||| |||  ||| |||||| || |||||||||||||||||||||||||    
T  10285932 tatgacatgtccat-aagctgttttcaacttatttccataagttctctatgttagcttatgcaaacgacttatagcttatatgaaac 10285847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 3235395 - 3235520
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaacagtttgaacttatttatc-tttgttat 166  Q
    ||||||||||| |||||||| |||||| || |  | |||||  | |||||||  ||||||| ||||||||||||||||||  |||||| || ||||||||    
T  3235395 taagctgttttcagcttatttccataaacttttcaagatagtatatgaaaacagcttatagtttatatgaaacagtttgactttatttttcatttgttat 3235494  T
Q  167 agaaatagcttataaataatcactta 192  Q
    | |||||||| ||| |||| ||||||    
T  3235495 aaaaatagctaatacataagcactta 3235520  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 11513957 - 11513886
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||| |||| |||||||| ||| ||| |||  |||||||||| ||||||| |||||||||||||||||||    
T  11513957 taagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaa 11513886  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 22681196 - 22681267
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||||||||||||||| ||||||| |||  | ||||| || |||||||  ||||||||||||||||||    
T  22681196 taagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaa 22681267  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 10143210 - 10143104
Alignment:
Q  89 ccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagtttgaactta--tttatc-tttgttatagaaatagcttataaata 184  Q
    |||||| ||||  |||||||||| ||||||  |||||||||||||||  |||||||||| |||||  |||||| ||||||||||||||| |||||| |||    
T  10143210 ccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtttg-acttaattttatcttttgttatagaaataacttatacata 10143112  T
Q  185 atcactta 192  Q
    | ||||||    
T  10143111 agcactta 10143104  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 39983413 - 39983330
Alignment:
Q  55 atgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||||| ||||| |||| || |||||  ||| ||||||  | |||||||| ||||||| |||||||||||||||||||    
T  39983413 atgacatgtctat-aagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatgaaa 39983330  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 44238047 - 44238110
Alignment:
Q  70 agctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttat 133  Q
    ||||| |||||||||||| |||||| ||||  |||||| ||| ||||||| |||||||||||||    
T  44238047 agctggttttagcttatttccataaactctccatgataacttctgaaaacaacttatagcttat 44238110  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 29430760 - 29430695
Alignment:
Q  122 cttatagcttatatgaaa-cagtttgaacttatttatcttt-gttatagaaatagcttataaataa 185  Q
    ||||||||||||| |||| ||||||||  ||||||| |||| ||||||||||||||||||| ||||    
T  29430760 cttatagcttataagaaaacagtttgactttatttaacttttgttatagaaatagcttatacataa 29430695  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 41033055 - 41033092
Alignment:
Q  159 tttgttatagaaatagcttataaataatcacttaatta 196  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  41033055 tttgttatagaaatagcttatacataagcacttaatta 41033092  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 43635099 - 43635179
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat 135  Q
    |||||||||||| | |||||||||| ||||||||  |||||||| |  |||||||||| ||| ||| ||||||||| |||||    
T  43635099 tatgacatgtctgt-aagctgttttaagcttattttcataagcttttcatgatagcttatgagaacaacttatagcgtatat 43635179  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 14666571 - 14666527
Alignment:
Q  104 gatagcttgtgaaaacgacttatagcttatatgaaa-cagtttga 147  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||    
T  14666571 gatagcttgtgaaaacaacttataacttatatgaaatcagtttga 14666527  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 17952748 - 17952832
Alignment:
Q  104 gatagcttgtgaaaacgacttatagcttatatgaaac-agtttgaacttattt-atcttt-gttatagaaatagcttataaataa 185  Q
    |||||||| |||||||  ||| ||||||||||||||  |||||||  |||||| |||||| ||||||||||||||||||| ||||    
T  17952748 gatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataa 17952832  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 33942209 - 33942129
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttga 147  Q
    ||||||||||| |||| |||  ||| ||||||  ||||| |||| ||||||| |||||||||||| ||| |||||||||||    
T  33942209 taagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaacttatagcttacatgaaaacagtttga 33942129  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 35485976 - 35485896
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttat-atgaaacagtttga 147  Q
    ||||||||||| |||| ||| ||||| |||||  | |||||||| | ||||| ||||||||||||| |||||| |||||||    
T  35485976 taagctgttttcagctcatttccataggctcttcaggatagcttataaaaacaacttatagcttataatgaaatagtttga 35485896  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 24887282 - 24887410
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaa-acagtttgaactta 152  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||  | |||||||| |||||||  ||| ||||||||||||| |||||||||  |||    
T  24887282 tatgacatgtc-attaa-ctgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgacttta 24887379  T
Q  153 -tttatct-ttgttatagaaatagcttataa 181  Q
     ||||||| ||||||||||||||||||||||    
T  24887380 ttttatctattgttatagaaatagcttataa 24887410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 27792931 - 27792804
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta-tttatc-tttgtt 164  Q
    |||| |||||| |||||||| | |||||||||  ||||||| || ||||||| ||||  |||||||||| ||| ||||||| |||| |||||| ||||||    
T  27792931 taagttgttttcagcttatttctataagctctacatgatagtttatgaaaacaacttgcagcttatatgaaaatagtttgaccttattttatcttttgtt 27792832  T
Q  165 atagaaatagcttataaataatcactta 192  Q
     | ||||||||||||| |||| ||||||    
T  27792831 tttgaaatagcttatacataagcactta 27792804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 38462340 - 38462213
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa-cagtttgaacttattt-atcttt-gtt 164  Q
    |||| |||||| |||||||| ||||||||| |    |||||||| |||||||   ||||||| ||||||||| ||||||||  |||||| |||||| | |    
T  38462340 taagttgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatcttttggt 38462241  T
Q  165 atagaaatagcttataaataatcactta 192  Q
    ||||||||||||||||||||| ||||||    
T  38462240 atagaaatagcttataaataaacactta 38462213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 43115110 - 43115040
Alignment:
Q  73 tgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaacagt 143  Q
    |||||| |||||||| |||||||||||  ||||||| |  ||||||| ||||||||||||||| |||||||    
T  43115110 tgttttcagcttatttccataagctctcaatgatagttcatgaaaacaacttatagcttatataaaacagt 43115040  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 43875684 - 43875627
Alignment:
Q  91 ataagctctggatgatagcttgtgaaaacgacttatagcttatatga-aacagtttga 147  Q
    |||||||||  |||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  43875684 ataagctctccatgatagcttatgaaaacaacttatagcttatatgagaacagtttga 43875627  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 14548735 - 14548803
Alignment:
Q  71 gctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||| |||||||| |||||||||||  |  ||| ||| ||||||| |||||||||||||||||||    
T  14548735 gctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaa 14548803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 23785314 - 23785234
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaa-acagtttga 147  Q
    |||| |||||| ||||| || |||||||||||  |||| |||||||||||||   |||||||||||||||| |||||||||    
T  23785314 taagttgttttcagcttgtttccataagctctccatgagagcttgtgaaaacagtttatagcttatatgaatacagtttga 23785234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 40122751 - 40122883
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa-cagtttgaactta 152  Q
    |||||||| ||||| ||| ||||||||||||||| |||| | || |  | |||||||| | ||||| ||||||||||| ||||||| ||||||||  |||    
T  40122751 tatgacatctctat-aagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt-tatgaaaacagtttgacttta 40122848  T
Q  153 ttt-atcttt-gttatagaaatagcttataaataa 185  Q
    ||| |||||| ||||| ||||||||||||| ||||    
T  40122849 ttttatcttttgttattgaaatagcttatacataa 40122883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 42733960 - 42734014
Alignment:
Q  80 agcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttata 134  Q
    |||||||| |||||||||||  | ||||||| |||||||| ||||||||||||||    
T  42733960 agcttatttccataagctctccacgatagctggtgaaaacaacttatagcttata 42734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 43116478 - 43116510
Alignment:
Q  107 agcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||| |||||||||||||||||||||||||||    
T  43116478 agcttatgaaaacgacttatagcttatatgaaa 43116510  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 27481320 - 27481432
Alignment:
Q  83 ttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagtttgaactt--atttat-ctttgttatagaaatagctta 178  Q
    ||||| ||||||||| |  |||||||||| ||||||  ||||||||||||||| ||||||||||| ||||   ||||| |||||||||||||||||||||    
T  27481320 ttatttccataagctatccatgatagcttatgaaaataacttatagcttatatggaaacagtttg-acttcgttttatcctttgttatagaaatagctta 27481418  T
Q  179 taaataatcactta 192  Q
    || |||| ||||||    
T  27481419 tacataaacactta 27481432  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 38010773 - 38010702
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||||||||||||||| ||||||| |||  | ||||| || |||||||  ||||||||||||||||||    
T  38010773 taagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaa 38010702  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 5369738 - 5369827
Alignment:
Q  104 gatagcttgtgaaaacgacttatagcttatatgaaa-cagtttgaacttatttatctttgttatagaaatagcttataaataatcactta 192  Q
    |||||||| |||||||  |||||||| ||||||||| ||||||||  ||||| || ||| |||||||| ||||||||| |||| ||||||    
T  5369738 gatagcttatgaaaacagcttatagcatatatgaaaacagtttgactttattaattttttttatagaattagcttatacataagcactta 5369827  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 44151478 - 44151569
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagttt 145  Q
    ||||||||||| || ||| |||||| |||||||| ||||||||| |  | ||||| || ||||||| ||||||||||||||| ||||||||||    
T  44151478 tatgacatgtccat-aagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttt 44151569  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 40439113 - 40439042
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||||| |||||| |||||||||||  | |||||||  ||||||| ||||||| | |||||||||    
T  40439113 taagctgtttttaacttatttccataagctcttcaggatagctaatgaaaacaacttataacatatatgaaa 40439042  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 39506014 - 39505936
Alignment:
Q  69 aagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaacagtttga 147  Q
    ||||| |||| |||||||| |||||| ||||  |  ||||||| ||||||| |||||  ||||||||||||||||||||    
T  39506014 aagctattttcagcttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatatgaaacagtttga 39505936  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 12234887 - 12234931
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctct 99  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||    
T  12234887 tatgacatgtctat-aagctgttttcagcttatttccataagctct 12234931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 33894639 - 33894555
Alignment:
Q  110 ttgtgaaaacgacttatagcttatatgaaa-cagtttgaacttattt-atcttt-gttatagaaatagcttataaataatcactta 192  Q
    |||| ||||| || || ||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||| |||| ||||||    
T  33894639 ttgtaaaaacaacataaagcttatatgaaaacagtttga-cttattttatcttttgttatagaaatagcttatacataagcactta 33894555  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 31030148 - 31030266
Alignment:
Q  75 tttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatga-aacagtttgaacttatttatctttgttatagaaata 173  Q
    |||| |||||||| |||||||||||  | || |||||  |||||| ||||||||||||||||| ||||  ||||  |||||||  ||||||||| |||||    
T  31030148 ttttcagcttatttccataagctctccaggacagcttaggaaaactacttatagcttatatgataacaacttgactttatttaaatttgttataaaaata 31030247  T
Q  174 gcttataaataatcactta 192  Q
    ||||||| |||| ||||||    
T  31030248 gcttatacataagcactta 31030266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 18704038 - 18704166
Alignment:
Q  58 acatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagtttgaacttattta 156  Q
    |||||||||| ||| |||||| |||||||| ||||||| |||   | ||||||| ||||||| |||||||||||||||  ||| || ||||  |||||||    
T  18704038 acatgtctat-aagttgttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttatataaaaatagcttgactttattta 18704136  T
Q  157 tc-tttgttatagaaatagcttataaataa 185  Q
    || ||||||||||||||| |||||| ||||    
T  18704137 tcttttgttatagaaataacttatacataa 18704166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 41016226 - 41016150
Alignment:
Q  80 agcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaacttattt 155  Q
    ||||||||  |||||||| |  ||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||    
T  41016226 agcttattttcataagctttccatgatggcttgtgaaaacaacttatagcttatatgaaaacagtttgaatttattt 41016150  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 12460017 - 12460131
Alignment:
Q  73 tgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta-tttatc-tttgttataga 169  Q
    ||||||| |||||||  ||||||||||| | ||||||||||||| || |||||||| |||| || ||||| | | |||||| |||||| |||||||||||    
T  12460017 tgtttttggcttattttcataagctctgcaagatagcttgtgaagacaacttatagtttatttgaaaacaatat-aacttattttatcttttgttataga 12460115  T
Q  170 aatagcttataaataa 185  Q
    ||||||||||| ||||    
T  12460116 aatagcttatacataa 12460131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 37588371 - 37588442
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||| |||||||| |||||||||||  |  ||| ||| ||||||| |||||||||||||||||||    
T  37588371 taagctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaa 37588442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 37690633 - 37690719
Alignment:
Q  53 ctatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagc-ttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||| || ||||||||||| |||||||| |||||||||||  || ||| | || ||||||| |||||||||||||||||||    
T  37690633 ctatgacatgt-taataagctgttttcagcttatttccataagctctccataataactttatgaaaacaacttatagcttatatgaaa 37690719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 37526196 - 37526281
Alignment:
Q  53 ctatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||| || ||||||||||| |||||||| |||||||||||  |  | | ||| ||||||| |||||||||||||||||||    
T  37526196 ctatgacatgt-taataagctgttttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagcttatatgaaa 37526281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 2568710 - 2568646
Alignment:
Q  75 tttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||||||||  ||| ||||||  |||||||||| ||||||| |||||||||||||| ||||    
T  2568710 tttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaa 2568646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 14295565 - 14295449
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta-tttatc-tttgtt 164  Q
    ||||||||||| |||||| | | | |||||||  | ||||||||  ||||||  ||||||||||||||| |||||||||||  ||| |||||| ||||||    
T  14295565 taagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgtt 14295466  T
Q  165 atagaaatagcttataa 181  Q
    |||||||||||| ||||    
T  14295465 atagaaatagctaataa 14295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 14714944 - 14714977
Alignment:
Q  159 tttgttatagaaatagcttataaataatcactta 192  Q
    |||||||||||||||||||||| |||||||||||    
T  14714944 tttgttatagaaatagcttatacataatcactta 14714977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 28586777 - 28586886
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta-tttatc-tttgtt 164  Q
    ||||||||||| |||||||| | |||||||||  | ||||||| || |||||  ||||||  ||||||| |||||||||||  ||| |||||| ||||||    
T  28586777 taagctgttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgactttattttatcttttgtt 28586876  T
Q  165 atagaaatag 174  Q
    ||||||||||    
T  28586877 atagaaatag 28586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 29054952 - 29054896
Alignment:
Q  83 ttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||| |||||||||||  ||||||| || || |||| |||||||||||||||||||    
T  29054952 ttatttccataagctctacatgatagtttatggaaacaacttatagcttatatgaaa 29054896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 39257421 - 39257524
Alignment:
Q  91 ataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaacagtttgaacttatttatc--tttgttatagaaatagcttataaataatca 188  Q
    |||||||||  ||||| |||| ||||||| |||||||| ||||||||||  ||||||  ||||||  |  ||||||||||| ||||| |||| |||| ||    
T  39257421 ataagctctccatgattgcttatgaaaacaacttatagtttatatgaaaaggtttgactttattttaccttttgttatagagatagcatatacataagca 39257520  T
Q  189 ctta 192  Q
    ||||    
T  39257521 ctta 39257524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 21157826 - 21157700
Alignment:
Q  69 aagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta-tttat-ctttgtta 165  Q
    ||||||||||||||||||| |||||||||||  | |||||| | |||||||  ||||||||||| ||| |||||||||||  ||| ||||| ||||||||    
T  21157826 aagctgtttttagcttatttccataagctcttcaggatagcatatgaaaacatcttatagcttacatgaaaacagtttgactttagtttatactttgtta 21157727  T
Q  166 tagaaatagcttataaataatcactta 192  Q
    |  |||||||| ||| |||| ||||||    
T  21157726 tcaaaatagctgatacataagcactta 21157700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 30207569 - 30207662
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttga 147  Q
    |||||||||||| | |||||||||| |||||||| |||||| ||||  | | |||||| ||||||| |||||||||||||||| |||||||||||    
T  30207569 tatgacatgtctgt-aagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttga 30207662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 42866148 - 42866047
Alignment:
Q  46 aaacattctatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagtt 144  Q
    ||||||||||||| ||||| || ||| || |||||||||| | |||||||||||  | |||||||| ||||||| |||||||||||||||  ||||||||    
T  42866148 aaacattctatgatatgtccat-aagatgcttttagcttacttccataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaacagtt 42866050  T
Q  145 tga 147  Q
    |||    
T  42866049 tga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 51197493 - 51197580
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaa-acagtttgaacttattt 155  Q
    |||||||||||||||||||| ||||||||||| |||||||  || ||||||| |  ||||||||||||||| | |||||||| ||||||    
T  51197493 taagctgtttttagcttatttccataagctct-gatgataaattatgaaaacaatgtatagcttatatgaatatagtttgaatttattt 51197580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 11802593 - 11802528
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttat 133  Q
    ||||||||||| ||||||||| ||||||||||  || ||||||| ||||||| |||| ||||||||    
T  11802593 taagctgttttcagcttattctcataagctctccataatagcttatgaaaacaacttgtagcttat 11802528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 18630717 - 18630668
Alignment:
Q  90 cataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||||||   |||||||||||||||| |||||||||||||||||||    
T  18630717 cataagctctgttggatagcttgtgaaaacaacttatagcttatatgaaa 18630668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 49219198 - 49219127
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||| |||||| |||||||| |||||| ||||  | ||||| || ||||||| |||||||||||||||||||    
T  49219198 taagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaa 49219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 54325048 - 54325163
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta-tttatc-tttgtt 164  Q
    ||||||||||| || ||||  |||||| ||||  |||||||||| ||||||   ||||||||||||||| |||||||||||  ||| |||||| |||||     
T  54325048 taagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgta 54325147  T
Q  165 atagaaatagcttata 180  Q
    |||||||||| |||||    
T  54325148 atagaaatagtttata 54325163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 50800028 - 50800111
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||||||||| |||||||||| |||||||| ||| ||| |||  ||||||||||  ||||||  ||||||||||||| ||||    
T  50800028 tatgacatgtctat-aagctgttttcagcttatttcca-aagttctccatgatagcttaagaaaacagcttatagcttataagaaa 50800111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 24160545 - 24160633
Alignment:
Q  107 agcttgtgaaaacgacttatagcttatatg-aaacagtttgaacttat-ttatc-tttgttatagaaatagcttataaataatcactta 192  Q
    ||||| ||||||| |||||||||||| ||| ||| |||||||| |||| ||||| ||||||||||||| |||||||  |||| ||||||    
T  24160545 agcttatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagcttatttataagcactta 24160633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 2117475 - 2117391
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||| ||||||||| ||||||||||||||||||| | |||||||||  | |||| ||| ||||||| |||||||| ||||||||||    
T  2117475 tatggcatgtctat-aagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaacttatagattatatgaaa 2117391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 33500506 - 33500612
Alignment:
Q  82 cttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagtttgaactta-tttatcttt-gttatagaaatagctta 178  Q
    |||||| ||||||| |||  ||||||||||| | ||||  |||||| ||||||| ||||||||||||  ||| ||||||||| |||||||||||||||||    
T  33500506 cttatttccataagttctacatgatagcttgcggaaacagcttataacttatattgaaacagtttgattttactttatcttttgttatagaaatagctta 33500605  T
Q  179 taaataa 185  Q
    || ||||    
T  33500606 tacataa 33500612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 281846 - 281974
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa-cagtttgaactta 152  Q
    |||||||||||||| ||| |||||| |||||||| |||| ||||||  | |||||||| |||| ||  |||||||||||||||||| ||  ||||  |||    
T  281846 tatgacatgtctat-aagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgacttta 281944  T
Q  153 ttt-atcttt-gttatagaaatagcttata 180  Q
    ||| |||||| ||||||| |||||||||||    
T  281945 ttttatcttttgttataggaatagcttata 281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 4247717 - 4247772
Alignment:
Q  138 aacagtttgaacttatttatcttt-gttatagaaatagcttataaataatcactta 192  Q
    ||||||||||| || ||||||||| ||||||||||||||||||| |||| ||||||    
T  4247717 aacagtttgaatttttttatcttttgttatagaaatagcttatacataagcactta 4247772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 1401156 - 1401074
Alignment:
Q  80 agcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttata-tgaaacagtttgaacttatttatcttt 161  Q
    |||||||  |||||||||||  |||||||||| |||||||  ||||||||||||| | || ||||||||  ||||||||||||    
T  1401156 agcttatctccataagctctccatgatagcttatgaaaacagcttatagcttatactaaagcagtttgattttatttatcttt 1401074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 28088238 - 28088304
Alignment:
Q  73 tgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||| |||||||| |||| ||||||  |||||||||| |||||||   |||||||||||||||||    
T  28088238 tgttttgagcttatttccatgagctctccatgatagcttatgaaaacagtttatagcttatatgaaa 28088304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 7931799 - 7931851
Alignment:
Q  67 ttaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaac 119  Q
    ||||| |||||| |||||||| |||||||||||  | ||||||||||||||||    
T  7931799 ttaagttgttttcagcttatttccataagctctataggatagcttgtgaaaac 7931851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 35590908 - 35590969
Alignment:
Q  73 tgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttata 134  Q
    |||||| |||||||| |||||||||||  |||||||||| ||||| ||||||||||||||||    
T  35590908 tgttttcagcttatttccataagctctccatgatagcttatgaaatcgacttatagcttata 35590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 12564885 - 12564956
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||| |||||||| || ||||| ||  | |||||||| ||||||| |||||||||||||||||||    
T  12564885 taagctgttttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaaa 12564956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 23902078 - 23902149
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||| |||||| |||||| | |||||||||||  | |||||||| ||||||| |||||||||||||||||||    
T  23902078 taagttgttttcagcttacttccataagctctctaagatagcttttgaaaacaacttatagcttatatgaaa 23902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 17269304 - 17269182
Alignment:
Q  73 tgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaacttattt--atctttgttataga 169  Q
    |||||||| |||||| || ||||||||  | |||||||| ||||||| |||||| ||||||||| ||||| |||||  ||||||  |  |||||| ||||    
T  17269304 tgtttttaacttattaccgtaagctctccaggatagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctaga 17269205  T
Q  170 aatagcttataaataatcactta 192  Q
    |||| |||||| |||| ||||||    
T  17269204 aataacttatacataagcactta 17269182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 43029391 - 43029537
Alignment:
Q  45 aaaacattctatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaacagtt 144  Q
    |||||| | ||| |||||||||| ||||| |||| |||||||| ||||||||| |  |  ||||||| ||||||   || ||| |||||| |||||||||    
T  43029391 aaaacagtttattacatgtctat-aagctattttcagcttatttccataagctttaaagaatagcttatgaaaatacctcataacttataggaaacagtt 43029489  T
Q  145 tgaactta-tttatc-tttgttatagaaatagcttataaataatcact 190  Q
    |||| ||| |||||| |||||| ||||||||| ||||| |||| ||||    
T  43029490 tgaatttattttatcttttgttgtagaaataggttatacataagcact 43029537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 4622165 - 4622044
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaactta 152  Q
    ||||||||||| || |||||||||||||||||||  || |||||||  | |||||| | || ||||  ||||||||||||||| ||| |||||||| | |    
T  4622165 tatgacatgtccat-aagctgtttttagcttattttcacaagctctccaagatagcatatggaaacagcttatagcttatatgaaaagagtttgaattca 4622067  T
Q  153 ttt-atc-tttgttatagaaata 173  Q
    ||| ||| |||||||||||||||    
T  4622066 tttgatcttttgttatagaaata 4622044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 23895338 - 23895268
Alignment:
Q  125 atagcttatatga-aacagtttgaacttattt-atcttt-gttatagaaatagcttataaataatcactta 192  Q
    ||||| ||||||| ||||||||||| |||||| |||||| ||||||||||||||||||| ||||| |||||    
T  23895338 atagcatatatgagaacagtttgaatttattttatcttttgttatagaaatagcttatacataataactta 23895268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 39347978 - 39348047
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatga 137  Q
    |||| |||||| |||||||| ||||||||| || | ||||| || ||||||| ||||||||||| |||||    
T  39347978 taagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagcttgtatga 39348047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 45107662 - 45107555
Alignment:
Q  90 cataagctctggatgatagcttgtgaaaacgact---tatagcttatatgaaac-agtttgaacttattt-atctttgttatagaaatagcttataaata 184  Q
    ||||||||||   ||||||||| |||||||||||   |||| |||||||||||  |||||||  |||||| || ||| |||||||||||||||||| |||    
T  45107662 cataagctctccgtgatagcttatgaaaacgactaattataacttatatgaaaatagtttgactttattttatttttcttatagaaatagcttatagata 45107563  T
Q  185 atcactta 192  Q
    | ||||||    
T  45107562 agcactta 45107555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 25005831 - 25005879
Alignment:
Q  91 ataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    |||||||||  | |||||||| ||||||| |||||||||||||||||||    
T  25005831 ataagctctccaggatagcttatgaaaacaacttatagcttatatgaaa 25005879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 26946494 - 26946526
Alignment:
Q  104 gatagcttgtgaaaacgacttatagcttatatg 136  Q
    |||||||| ||||||||||||||||||||||||    
T  26946494 gatagcttatgaaaacgacttatagcttatatg 26946526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 30257742 - 30257662
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatat-gaaacagtttga 147  Q
    ||||||||||| |||||||| | |||||| ||  | ||||| || ||||||| ||||| ||||||||| ||||||||||||    
T  30257742 taagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatatggaaacagtttga 30257662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 45205127 - 45205059
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatg 136  Q
    |||| |||||| |||||||| |||| | ||||  |||||||||| ||||||| |||| |||||||||||    
T  45205127 taagttgttttcagcttatttccatgaactctacatgatagcttatgaaaacaacttctagcttatatg 45205059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 45999354 - 45999414
Alignment:
Q  123 ttatagcttatatgaaa-cagtttgaacttat-ttatcttt-gttatagaaatagcttata 180  Q
    ||||||||||||||||| ||||||||  |||| |||||||| |||||||||||||||||||    
T  45999354 ttatagcttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttata 45999414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 47960634 - 47960706
Alignment:
Q  68 taagctgttttta-gcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||||| ||||||| ||  |||||||  | |||| ||| |||||||| ||||||||||||||||||    
T  47960634 taagctgtttttatgcttatttcctcaagctcttcaggataacttatgaaaacggcttatagcttatatgaaa 47960706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 11183617 - 11183535
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatga 137  Q
    ||||| |||||||| |||||||||| |||||||| |||||||||||  | | ||||||||||||||  ||||||||| ||||||    
T  11183617 tatgatatgtctat-aagctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaatatga 11183535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 10437930 - 10437837
Alignment:
Q  81 gcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaacagtttgaactta-tttatc-tttgttatagaaat 172  Q
    ||||||| | ||||||||| || |||||||| ||||| | ||||| ||||||||| |||||||||||  ||| |||||| ||||||||||||||    
T  10437930 gcttatttctataagctctcgaagatagcttatgaaacctacttaaagcttatataaaacagtttgactttattttatcttttgttatagaaat 10437837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 11059745 - 11059814
Alignment:
Q  107 agcttgtgaaaacgacttatagcttatatgaaacagtttgaacttatttatctttgttatagaaatagcttata 180  Q
    ||||| ||||||| || |||||||||||||||||| ||||| ||||||    ||||||||||| ||||||||||    
T  11059745 agcttatgaaaacaacctatagcttatatgaaacaatttgaccttatt----tttgttatagagatagcttata 11059814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 31705144 - 31705072
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaac 140  Q
    ||||||||||| |||||||| |||||| ||||  | || ||||| |||||||  |||||||||||||||||||    
T  31705144 taagctgttttcagcttatttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaac 31705072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 13561344 - 13561437
Alignment:
Q  89 ccataagctctggatgatagcttgtgaaaacgacttatagcttatatg-aaacagtttgaacttattta--tctttgttatagaaatagcttat 179  Q
    |||||||||||  |||||||||||||||||| | |||||  ||||||| ||||| |||||  |||||||  | | |||||||||||||||||||    
T  13561344 ccataagctctcaatgatagcttgtgaaaacaagttataatttatatgaaaacaatttgactttatttaattttctgttatagaaatagcttat 13561437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 8629074 - 8629041
Alignment:
Q  159 tttgttatagaaatagcttataaataatcactta 192  Q
    ||||||||||||||||||||||||||| ||||||    
T  8629074 tttgttatagaaatagcttataaataagcactta 8629041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 11795164 - 11795080
Alignment:
Q  54 tatgacatgtctattaagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaa 139  Q
    ||||||||||| || || ||||||| |||||||| |||||||||||  || ||||||| ||||| |  |||||| |||||||||||    
T  11795164 tatgacatgtccat-aacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaa 11795080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 29973134 - 29973013
Alignment:
Q  74 gtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatgaaac-agtttgaacttattt-atctt-tgttatagaa 170  Q
    ||||| || ||||| |||||| ||||  | |||||||| ||||||| ||||||||||||| |||||  |||||||  |||||| | ||| ||||| ||||    
T  29973134 gttttcagtttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaa 29973035  T
Q  171 atagcttataaataatcactta 192  Q
    |||||||||| |||| ||||||    
T  29973034 atagcttatatataagcactta 29973013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 7918788 - 7918848
Alignment:
Q  72 ctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagctta 132  Q
    ||||||| |||||||| ||| |||||||  | |||||||| ||||||| ||||||||||||    
T  7918788 ctgttttcagcttatttccacaagctctacaagatagcttatgaaaacaacttatagctta 7918848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 31862552 - 31862436
Alignment:
Q  68 taagctgtttttagcttattcccataagctctggatgatagcttgtgaaaacgacttatagcttatatga-aacagtttgaacttat-ttatc-tttgtt 164  Q
    ||||||||||| ||||||||  ||||||||||  | |||| ||| |||||||  ||||||||||||| || || |||||||  |||| ||||| ||||||    
T  31862552 taagctgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattatcttttgtt 31862453  T
Q  165 atagaaatagcttataa 181  Q
    || |||||| |||||||    
T  31862452 attgaaataacttataa 31862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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